| MirGeneDB ID | Cmi-Mir-129-P4 |
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| Family name |
MIR-129 (all species) |
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| Species |
Australian ghostshark (Callorhinchus milii) |
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| MiRBase ID |
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| Paralogues |
Cmi-Mir-129-P2
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| Orthologues |
Aca-Mir-129-P4
Ami-Mir-129-P4
Gja-Mir-129-P4
Lch-Mir-129-P4
Mun-Mir-129-P4
Pbv-Mir-129-P4
Spt-Mir-129-P4
Sto-Mir-129-P4
Xla-Mir-129-P4
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| Node of Origin (locus) |
Gnathostomata
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| Node of Origin (family) |
Chordata
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Genome context
(GCA_000165045.2_Callorhinchus_milii-6.1.3) |
KI637116.1: 4119-4183 [+]
UCSC
Ensembl
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| Seed |
UUUUUGC |
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Precursor
(pre-Mir +30nt flank) |
AAAGAAGGAUGGAAGAAGUCUCUCUUGGAUCUUUUUGCGGUCUGGGCUUUCUGUGUUUAUCCAAACUAUUCAGAAAGCCCUUACCCAAAAAGCGUUUGAGGUGGACACUCUCAACGCUGGAUUUG
Get precursor sequence
|
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| Structure | 10 20 30 40 50 60
AAAGAAGGAUGGAAGAA-- CU UG -| C CU UGUGUUUAUC
GUCU CU GAU CUUUUUG GGU GGGCUUUC \
CAGG GA UUG GAAAAAC CCA CCCGAAAG C
GUUUAGGUCGCAACUCUCA UG GU C^ - UU ACUUAUCAAA
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
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| 3' NTU |
No
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| Motifs | CNNC at 3p(+17), UGUG in loop |
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Tissue expression
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| Bl |
Br |
Ey |
Gi |
He |
In |
Ki |
Li |
Mu |
Ov |
Pa |
Re |
Sk |
Sp |
Te |
Ut |
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| Mature sequence |
Cmi-Mir-129-P4_5p |
| mirBase accession | None |
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| Sequence |
0- CUUUUUGCGGUCUGGGCUUUC -21
Get sequence
|
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| Star sequence |
Cmi-Mir-129-P4_3p* |
| mirBase accession | None |
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| Sequence |
44- AAGCCCUUACCCAAAAAGCGU -65
Get sequence
|
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