| MirGeneDB ID | Ami-Mir-129-P4 |
|---|
| Family name |
MIR-129 (all species) |
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| Species |
American alligator (Alligator mississippiensis) |
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| MiRBase ID |
|
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| Paralogues |
Ami-Mir-129-P1
Ami-Mir-129-P2
|
|---|
| Orthologues |
Aca-Mir-129-P4
Cmi-Mir-129-P4
Gja-Mir-129-P4
Lch-Mir-129-P4
Mun-Mir-129-P4
Pbv-Mir-129-P4
Spt-Mir-129-P4
Sto-Mir-129-P4
Xla-Mir-129-P4
|
|---|
| Node of Origin (locus) |
Gnathostomata
|
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| Node of Origin (family) |
Chordata
|
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Genome context
(GCF_000281125.3_ASM28112v4_AMI_add) |
NW_017709598.1: 4871370-4871437 [+]
UCSC
|
|---|
| Seed |
UUUUUGC |
|---|
Precursor
(pre-Mir +30nt flank) |
UCGGCGGCAGCAGAGAGGUCUCCCCCGGGUCUUUUUGCGGUCUGGGCUUUCUGGGUCUGUCGCAGCCCGUGGCAGAAAGCCCUUACCCCAAAGAGCAUCCGGGGCUGCACAAGGCAUCGCUGGAGCUG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
UCGGCGGCAGCAGAGAG---| CUC - C CU GGGUCUGUCG
GU CCCCGGGU CUUUUUG GGU GGGCUUUCU \
CG GGGGCCUA GAGAAAC CCA CCCGAAAGA C
GUCGAGGUCGCUACGGAACA^ UC- C C UU CGGUGCCCGA
120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
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| Mature sequence |
Ami-Mir-129-P4_5p |
| mirBase accession | None |
|---|
| Sequence |
0- CUUUUUGCGGUCUGGGCUUUCU -22
Get sequence
|
|---|
| Star sequence |
Ami-Mir-129-P4_3p* |
| mirBase accession | None |
|---|
| Sequence |
46- AAGCCCUUACCCCAAAGAGCAU -68
Get sequence
|
|---|
