| MirGeneDB ID | Sto-Mir-129-P4 |
|---|
| Family name |
MIR-129 (all species) |
|---|
| Seed |
AGCCCUU |
|---|
| Species |
Cloudy Catshark (Scyliorhinus torazame) |
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| MiRBase ID |
|
|---|
| Paralogues |
Sto-Mir-129-P2
|
|---|
| Orthologues |
Aca-Mir-129-P4
Ami-Mir-129-P4
Cmi-Mir-129-P4
Gja-Mir-129-P4
Lch-Mir-129-P4
Mun-Mir-129-P4
Pbv-Mir-129-P4
Spt-Mir-129-P4
Xla-Mir-129-P4
|
|---|
| Node of Origin (locus) |
Gnathostomata
|
|---|
| Node of Origin (family) |
Chordata
|
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Genome context
(GCA_003427355_STO_add) |
BFAA01329546.1: 110-172 [-]
|
|---|
Precursor
(pre-Mir +30nt flank) |
GAGUGACAGGACGAAAAGUCCCUCUCGAAUCUUUUUGCGGUCUGGGCUUUCUGUCUCCAGCUGUGGUUAGAAAGCCCUUACCACAAAAAGCGUUUGAGGAGGACACUGGCAUCGCUGGAGAAC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
GAGUGACAGGACGAAAA-- CU -| C CU UGUCUCCA
GUCC CUCGAAU CUUUUUG GGU GGGCUUUC G
CAGG GAGUUUG GAAAAAC CCA CCCGAAAG C
CAAGAGGUCGCUACGGUCA AG C^ A UU AUUGGUGU
120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17), UGUG in loop |
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Tissue expression
|
|
|---|
| Star sequence |
Sto-Mir-129-P4_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- CUUUUUGCGGUCUGGGCUUUC -21
Get sequence
|
|---|
| Mature sequence |
Sto-Mir-129-P4_3p |
| mirBase accession | None |
|---|
| Sequence |
41- AAGCCCUUACCACAAAAAGCGU -63
Get sequence
|
|---|
