MirGeneDB 2.1

MirGeneDB ID

Sto-Mir-129-P4

Family name MIR-129 (all species)
Seed AGCCCUU
Species Cloudy Catshark (Scyliorhinus torazame)
MiRBase ID
Paralogues Sto-Mir-129-P2 
Orthologues Aca-Mir-129-P4  Ami-Mir-129-P4  Cmi-Mir-129-P4  Gja-Mir-129-P4  Lch-Mir-129-P4  Mun-Mir-129-P4  Pbv-Mir-129-P4  Spt-Mir-129-P4  Xla-Mir-129-P4 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Chordata
Genome context
(GCA_003427355_STO_add)
BFAA01329546.1: 110-172 [-]
Precursor
(pre-Mir +30nt flank)
GAGUGACAGGACGAAAAGUCCCUCUCGAAUCUUUUUGCGGUCUGGGCUUUCUGUCUCCAGCUGUGGUUAGAAAGCCCUUACCACAAAAAGCGUUUGAGGAGGACACUGGCAUCGCUGGAGAAC
Get precursor sequence
Structure
        10          20        30         40        50        60
GAGUGACAGGACGAAAA--    CU       -|      C   CU        UGUCUCCA 
                   GUCC  CUCGAAU CUUUUUG GGU  GGGCUUUC        G
                   CAGG  GAGUUUG GAAAAAC CCA  CCCGAAAG        C
CAAGAGGUCGCUACGGUCA    AG       C^      A   UU        AUUGGUGU 
 120       110       100        90        80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
 +
To
Star sequence

Sto-Mir-129-P4_5p*

mirBase accessionNone
Sequence
0- CUUUUUGCGGUCUGGGCUUUC -21
Get sequence
Mature sequence

Sto-Mir-129-P4_3p

mirBase accessionNone
Sequence
41- AAGCCCUUACCACAAAAAGCGU -63
Get sequence