| MirGeneDB ID | Xla-Mir-129-P2d |
|---|
| Family name |
MIR-129 (all species) |
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| Species |
African clawed frog (Xenopus laevis) |
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| MiRBase ID |
|
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| Paralogues |
Xla-Mir-129-P1c
Xla-Mir-129-P1d
Xla-Mir-129-P2c
Xla-Mir-129-P4
|
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| Orthologues |
Aca-Mir-129-P2
Ami-Mir-129-P2
Bta-Mir-129-P2
Cfa-Mir-129-P2
Cja-Mir-129-P2
Cli-Mir-129-P2
Cmi-Mir-129-P2
Cpi-Mir-129-P2
Cpo-Mir-129-P2
Dno-Mir-129-P2
Eca-Mir-129-P2
Ete-Mir-129-P2
Gja-Mir-129-P2
Hsa-Mir-129-P2
Laf-Mir-129-P2
Lch-Mir-129-P2
Loc-Mir-129-P2
Mdo-Mir-129-P2
Mml-Mir-129-P2
Mmr-Mir-129-P2
Mmu-Mir-129-P2
Mun-Mir-129-P2
Neu-Mir-129-P2
Oan-Mir-129-P2
Ocu-Mir-129-P2
Pab-Mir-129-P2
Pbv-Mir-129-P2
Pma-Mir-129-o2
Rno-Mir-129-P2
Sha-Mir-129-P2
Spt-Mir-129-P2
Sto-Mir-129-P2
Tgu-Mir-129-P2
Xtr-Mir-129-P2
|
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| Node of Origin (locus) |
X. laevis
|
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| Node of Origin (family) |
Chordata
|
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Genome context
(GCF_001663975.1_XLA_v2) |
NC_030729.1: 62832864-62832929 [+]
UCSC
Ensembl
|
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| Seed |
AGCCCUU |
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Precursor
(pre-Mir +30nt flank) |
CUAGUACUACAAUCUCUAUCUCUCUCAAAGCUUUUUGCGGUCUGGGCUUGCUGUUCUCAGUCAAAGUAACCAGGAAGCCCUUAUCCCAAAAAGAAUUUGCGAGGGAGGAUUUUCUUCUGACUCUUU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
CUAGUACUACAAUCUCUA-- U G-| C UCU- G UGUUCUCAGU
UCUCUC CAAA CUUUUUG GG GGGCUU C \
AGGGAG GUUU GAAAAAC CC CCCGAA G C
UUUCUCAGUCUUCUUUUAGG C AA^ - UAUU G ACCAAUGAAA
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17), UGUG in loop |
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Tissue expression
|
|
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| Star sequence |
Xla-Mir-129-P2d_5p* |
| mirBase accession | None |
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| Sequence |
0- CUUUUUGCGGUCUGGGCUUGC -21
Get sequence
|
|---|
| Mature sequence |
Xla-Mir-129-P2d_3p |
| mirBase accession | None |
|---|
| Sequence |
44- AAGCCCUUAUCCCAAAAAGAAU -66
Get sequence
|
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