| MirGeneDB ID | Sha-Mir-129-P1 |
|---|
| Family name |
MIR-129 (all species) |
|---|
| Species |
Tasmanian devil (Sarcophilus harrisii) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
Sha-Mir-129-P2
|
|---|
| Orthologues |
Ami-Mir-129-P1
Bta-Mir-129-P1
Cfa-Mir-129-P1
Cja-Mir-129-P1
Cpi-Mir-129-P1
Cpo-Mir-129-P1
Dno-Mir-129-P1
Dre-Mir-129-P1a
Dre-Mir-129-P1b
Eca-Mir-129-P1
Ete-Mir-129-P1
Gga-Mir-129-P1
Gja-Mir-129-P1
Gmo-Mir-129-P1a
Gmo-Mir-129-P1b
Hsa-Mir-129-P1
Laf-Mir-129-P1
Lch-Mir-129-P1
Loc-Mir-129-P1
Mal-Mir-129-P1a
Mal-Mir-129-P1b
Mml-Mir-129-P1
Mmr-Mir-129-P1
Mmu-Mir-129-P1
Mun-Mir-129-P1
Neu-Mir-129-P1
Oan-Mir-129-P1
Ocu-Mir-129-P1
Pab-Mir-129-P1
Pbv-Mir-129-P1
Pma-Mir-129-o1
Rno-Mir-129-P1
Spt-Mir-129-P1
Tgu-Mir-129-P1
Tni-Mir-129-P1a
Tni-Mir-129-P1b
Xla-Mir-129-P1c
Xla-Mir-129-P1d
Xtr-Mir-129-P1
|
|---|
| Node of Origin (locus) |
Gnathostomata
|
|---|
| Node of Origin (family) |
Chordata
|
|---|
Genome context
(DEVIL_add) |
GL864892.1: 59836-59900 [+]
UCSC
Ensembl
|
|---|
| Seed |
UUUUUGC |
|---|
Precursor
(pre-Mir +30nt flank) |
AGACGACGAGAGACUUUGUUCUUCGCGAAUCUUUUUGCGGUCUGGGCUUGCUGUAUAUAACUAUGUAGCCGGGAAGCCCUUACCCCAAAAAGCAUUCGAGGAGGACACAAUCGCCGAGGAAUCAU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
AGACGACGAGAGACUUU-- G -| C CU G UGUAUAUAA
GUUCUUC CGAAU CUUUUUG GGU GGGCUU C C
CAGGAGG GCUUA GAAAAAC CCA CCCGAA G U
UACUAAGGAGCCGCUAACA A C^ C UU G GCCGAUGUA
120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | UG at 5p(-14), CNNC at 3p(+17), UGUG in loop |
|---|
Tissue expression
|
| Bo |
Br |
He |
Ki |
Li |
Ly |
Pa |
Sk |
Sp |
Te |
| |
|
|
|
|
|
|
|
|
|
|
|---|
| Mature sequence |
Sha-Mir-129-P1_5p |
| mirBase accession | None |
|---|
| Sequence |
0- CUUUUUGCGGUCUGGGCUUGC -21
Get sequence
|
|---|
| Star sequence |
Sha-Mir-129-P1_3p* |
| mirBase accession | None |
|---|
| Sequence |
43- AAGCCCUUACCCCAAAAAGCAU -65
Get sequence
|
|---|
