MirGeneDB 2.1
MirGeneDB ID

Sha-Mir-129-P1

Family name MIR-129 (all species)
Seed UUUUUGC
Species Tasmanian devil (Sarcophilus harrisii)
MiRBase ID
Paralogues Sha-Mir-129-P2 
Orthologues Ami-Mir-129-P1  Bta-Mir-129-P1  Cfa-Mir-129-P1  Cpi-Mir-129-P1  Cpo-Mir-129-P1  Dno-Mir-129-P1  Dre-Mir-129-P1a  Dre-Mir-129-P1b  Ete-Mir-129-P1  Gga-Mir-129-P1  Gja-Mir-129-P1  Gmo-Mir-129-P1a  Gmo-Mir-129-P1b  Hsa-Mir-129-P1  Lch-Mir-129-P1  Loc-Mir-129-P1  Mal-Mir-129-P1a  Mal-Mir-129-P1b  Mml-Mir-129-P1  Mmu-Mir-129-P1  Mun-Mir-129-P1  Oan-Mir-129-P1  Ocu-Mir-129-P1  Pbv-Mir-129-P1  Pma-Mir-129-o1  Rno-Mir-129-P1  Spt-Mir-129-P1  Tgu-Mir-129-P1  Tni-Mir-129-P1a  Tni-Mir-129-P1b  Xla-Mir-129-P1c  Xla-Mir-129-P1d  Xtr-Mir-129-P1 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Chordata
Genome context
(DEVIL_add)		 GL864892.1: 59836-59900 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AGACGACGAGAGACUUUGUUCUUCGCGAAUCUUUUUGCGGUCUGGGCUUGCUGUAUAUAACUAUGUAGCCGGGAAGCCCUUACCCCAAAAAGCAUUCGAGGAGGACACAAUCGCCGAGGAAUCAU
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Structure
        10          20        30         40        50        60 
AGACGACGAGAGACUUU--       G     -|      C   CU      G UGUAUAUAA 
                   GUUCUUC CGAAU CUUUUUG GGU  GGGCUU C         C
                   CAGGAGG GCUUA GAAAAAC CCA  CCCGAA G         U
UACUAAGGAGCCGCUAACA       A     C^      C   UU      G GCCGAUGUA 
   120       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
Bo Br He Ki Li Ly Pa Sk Sp Te
Mature sequence

Sha-Mir-129-P1_5p
mirBase accessionNone
Sequence 
0- CUUUUUGCGGUCUGGGCUUGC -21
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Star sequence

Sha-Mir-129-P1_3p*
mirBase accessionNone
Sequence 
43- AAGCCCUUACCCCAAAAAGCAU -65
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