MirGeneDB 3.0
MirGeneDB ID

Eca-Mir-129-P1

Family name MIR-129 (all species)
Species Horse (Equus caballus)
MiRBase ID eca-mir-129b
Paralogues Eca-Mir-129-P2 
Orthologues Ami-Mir-129-P1  Bta-Mir-129-P1  Cfa-Mir-129-P1  Cja-Mir-129-P1  Cpi-Mir-129-P1  Cpo-Mir-129-P1  Dno-Mir-129-P1  Dre-Mir-129-P1a  Dre-Mir-129-P1b  Ete-Mir-129-P1  Gga-Mir-129-P1  Gja-Mir-129-P1  Gmo-Mir-129-P1a  Gmo-Mir-129-P1b  Hsa-Mir-129-P1  Laf-Mir-129-P1  Lch-Mir-129-P1  Loc-Mir-129-P1  Mal-Mir-129-P1a  Mal-Mir-129-P1b  Mml-Mir-129-P1  Mmr-Mir-129-P1  Mmu-Mir-129-P1  Mun-Mir-129-P1  Neu-Mir-129-P1  Oan-Mir-129-P1  Ocu-Mir-129-P1  Pab-Mir-129-P1  Pbv-Mir-129-P1  Pma-Mir-129-o1  Rno-Mir-129-P1  Sha-Mir-129-P1  Spt-Mir-129-P1  Tgu-Mir-129-P1  Tni-Mir-129-P1a  Tni-Mir-129-P1b  Xla-Mir-129-P1c  Xla-Mir-129-P1d  Xtr-Mir-129-P1 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Chordata
Genome context
(GCA_002863925.1_EquCab3.0)		 CM009159.1: 8563208-8563271 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-129-P1)		 Mir-670 CM009159.1: 8541552-8541614 [+] UCSC Ensembl
Mir-129-P1 CM009159.1: 8563208-8563271 [+] UCSC Ensembl
Seed UUUUUGC
Precursor
(pre-Mir +30nt flank)		 
AGAAGCCGACAGACUCUGCCCUUCGCGAAUCUUUUUGCGGUCUGGGCUUGCUGUACAUAACUCAAUAGCCGGAAGCCCUUACCCCAAAAAGCAUUCGCGGAGGGCGCGCUCGUCGAGAAGACGG
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Structure
        10          20        30         40        50        60 
AGAAGCCGACAGACUCU--             -|      C   CU      GCUGUACAUAA 
                   GCCCUUCGCGAAU CUUUUUG GGU  GGGCUU           \
                   CGGGAGGCGCUUA GAAAAAC CCA  CCCGAA           C
GGCAGAAGAGCUGCUCGCG             C^      C   UU      GGCCGAUAACU 
  120       110       100        90        80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17), UGUG in loop
Tissue expression
- +
Ps Bo Ca Em En En En En En En En Gl He He Ho Im Ki Li Lo Lu Ma Ma Mi Pl Sp Te Tr Ut Ut Yo
Mature sequence

Eca-Mir-129-P1_5p
mirBase accessionMIMAT0013045
Sequence 
0- CUUUUUGCGGUCUGGGCUUGC -21
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Star sequence

Eca-Mir-129-P1_3p*
mirBase accessionMIMAT0013046
Sequence 
42- AAGCCCUUACCCCAAAAAGCAU -64
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