MirGeneDB 3.0
MirGeneDB ID

Xtr-Mir-129-P1

Family name MIR-129 (all species)
Species Tropical clawed frog (Xenopus tropicalis)
MiRBase ID xtr-mir-129-1
Paralogues Xtr-Mir-129-P2 
Orthologues Ami-Mir-129-P1  Bta-Mir-129-P1  Cfa-Mir-129-P1  Cja-Mir-129-P1  Cpi-Mir-129-P1  Cpo-Mir-129-P1  Dno-Mir-129-P1  Dre-Mir-129-P1a  Dre-Mir-129-P1b  Eca-Mir-129-P1  Ete-Mir-129-P1  Gga-Mir-129-P1  Gja-Mir-129-P1  Gmo-Mir-129-P1a  Gmo-Mir-129-P1b  Hsa-Mir-129-P1  Laf-Mir-129-P1  Lch-Mir-129-P1  Loc-Mir-129-P1  Mal-Mir-129-P1a  Mal-Mir-129-P1b  Mml-Mir-129-P1  Mmr-Mir-129-P1  Mmu-Mir-129-P1  Mun-Mir-129-P1  Neu-Mir-129-P1  Oan-Mir-129-P1  Ocu-Mir-129-P1  Pab-Mir-129-P1  Pbv-Mir-129-P1  Pma-Mir-129-o1  Rno-Mir-129-P1  Sha-Mir-129-P1  Spt-Mir-129-P1  Tgu-Mir-129-P1  Tni-Mir-129-P1a  Tni-Mir-129-P1b  Xla-Mir-129-P1c  Xla-Mir-129-P1d 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Chordata
Genome context
(xenTro9_add)		 chr4: 3080989-3081053 [+] UCSC Ensembl
Seed UUUUUGC
Precursor
(pre-Mir +30nt flank)		 
UGGGGAGCUUGGAUCCAGUCCUUCUCAAAUCUUUUUGCGGUCUGGGCUUGCUGUAUGUAAAUACCUAGCCGGGAAGCCCUUACCCCAAAAAGCAUUUGCGGAGGGCGCAGUCGGCGGCGACAGCG
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Structure
        10          20        30         40        50        60 
UGGGGAGCUUGGAUCCA--       U     -|      C   CU      G UGUAUGUAA 
                   GUCCUUC CAAAU CUUUUUG GGU  GGGCUU C         A
                   CGGGAGG GUUUA GAAAAAC CCA  CCCGAA G         U
GCGACAGCGGCGGCUGACG       C     C^      C   UU      G GCCGAUCCA 
   120       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
- +
An Br Em Em He Ve
Mature sequence

Xtr-Mir-129-P1_5p
mirBase accessionMIMAT0003590
Sequence 
0- CUUUUUGCGGUCUGGGCUUGC -21
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Proposed targets TargetScanVert: xtr-miR-129
Star sequence

Xtr-Mir-129-P1_3p*
mirBase accessionNone
Sequence 
43- AAGCCCUUACCCCAAAAAGCAU -65
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