| MirGeneDB ID | Dre-Mir-129-P1a |
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| Family name |
MIR-129 (all species) |
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| Species |
Zebrafish (Danio rerio) |
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| MiRBase ID |
dre-mir-129-4
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| Paralogues |
Dre-Mir-129-P1b
Dre-Mir-129-P2a
Dre-Mir-129-P2b
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| Orthologues |
Ami-Mir-129-P1
Bta-Mir-129-P1
Cfa-Mir-129-P1
Cja-Mir-129-P1
Cpi-Mir-129-P1
Cpo-Mir-129-P1
Dno-Mir-129-P1
Eca-Mir-129-P1
Ete-Mir-129-P1
Gga-Mir-129-P1
Gja-Mir-129-P1
Gmo-Mir-129-P1a
Hsa-Mir-129-P1
Laf-Mir-129-P1
Lch-Mir-129-P1
Loc-Mir-129-P1
Mal-Mir-129-P1a
Mml-Mir-129-P1
Mmr-Mir-129-P1
Mmu-Mir-129-P1
Mun-Mir-129-P1
Neu-Mir-129-P1
Oan-Mir-129-P1
Ocu-Mir-129-P1
Pab-Mir-129-P1
Pbv-Mir-129-P1
Pma-Mir-129-o1
Rno-Mir-129-P1
Sha-Mir-129-P1
Spt-Mir-129-P1
Tgu-Mir-129-P1
Tni-Mir-129-P1a
Xtr-Mir-129-P1
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| Node of Origin (locus) |
Clupeocephala
|
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| Node of Origin (family) |
Chordata
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Genome context
(danRer11) |
chr25: 30176484-30176548 [+]
UCSC
Ensembl
|
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| Seed |
UUUUUGC |
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Precursor
(pre-Mir +30nt flank) |
ACUUCAGACUGCGAUUUGUCUUUCGCGAAUCUUUUUGCGGUCUGGGCUUGCUGUUCAUAAGUAUCUAGCUGGGAAGCCCUUACCCCAAAAAGCAUUUGCGGAAGGCGCAUUCACCGAAUGAUGCU
Get precursor sequence
|
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| Structure | 10 20 30 40 50 60
ACUUCAGACUGCGAUUU-- -| C CU G UGUUCAUAA
GUCUUUCGCGAAU CUUUUUG GGU GGGCUU C G
CGGAAGGCGUUUA GAAAAAC CCA CCCGAA G U
UCGUAGUAAGCCACUUACG C^ C UU G GUCGAUCUA
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
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| Motifs | UG at 5p(-14), CNNC at 3p(+17), UGUG in loop |
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Tissue expression
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| Br |
Br |
Em |
Ey |
Gu |
Gu |
He |
Li |
Li |
Ov |
Te |
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| Mature sequence |
Dre-Mir-129-P1a_5p |
| mirBase accession | MIMAT0001825 |
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| Sequence |
0- CUUUUUGCGGUCUGGGCUUGC -21
Get sequence
|
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| Star sequence |
Dre-Mir-129-P1a_3p* |
| mirBase accession | MIMAT0003158 |
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| Sequence |
43- AAGCCCUUACCCCAAAAAGCAU -65
Get sequence
|
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