| MirGeneDB ID | Tni-Mir-129-P2a |
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| Family name |
MIR-129 (all species) |
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| Species |
Pufferfish (Tetraodon nigroviridis) |
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| MiRBase ID |
|
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| Paralogues |
Tni-Mir-129-P1a
Tni-Mir-129-P1b
Tni-Mir-129-P2b
|
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| Orthologues |
Aca-Mir-129-P2
Ami-Mir-129-P2
Bta-Mir-129-P2
Cfa-Mir-129-P2
Cja-Mir-129-P2
Cli-Mir-129-P2
Cmi-Mir-129-P2
Cpi-Mir-129-P2
Cpo-Mir-129-P2
Dno-Mir-129-P2
Dre-Mir-129-P2a
Eca-Mir-129-P2
Ete-Mir-129-P2
Gja-Mir-129-P2
Gmo-Mir-129-P2a
Hsa-Mir-129-P2
Laf-Mir-129-P2
Lch-Mir-129-P2
Loc-Mir-129-P2
Mal-Mir-129-P2a
Mdo-Mir-129-P2
Mml-Mir-129-P2
Mmr-Mir-129-P2
Mmu-Mir-129-P2
Mun-Mir-129-P2
Neu-Mir-129-P2
Oan-Mir-129-P2
Ocu-Mir-129-P2
Pab-Mir-129-P2
Pbv-Mir-129-P2
Pma-Mir-129-o2
Rno-Mir-129-P2
Sha-Mir-129-P2
Spt-Mir-129-P2
Sto-Mir-129-P2
Tgu-Mir-129-P2
Xtr-Mir-129-P2
|
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| Node of Origin (locus) |
Clupeocephala
|
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| Node of Origin (family) |
Chordata
|
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Genome context
(Tetraodon_nigroviridis.TETRAODON8.dna.toplevel) |
13: 4272364-4272424 [+]
UCSC
Ensembl
|
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| Seed |
AGCCCUU |
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Precursor
(pre-Mir +30nt flank) |
ACCAUGAUUUCGCUGCUGUUCUCUUCGGGUCUUUUUGCGGUCUGGGCUUGCUGUCUAUGACCACCCAGGAAGCCCUUACCCCAAAAAGCAUCUGCAGGGGACCCCCGCAUCAGGGAUAUUU
Get precursor sequence
|
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| Structure | 10 20 30 40 50
ACCAUGAUUUCGCUGCU-- U -| C CU G UGUCUAU
GUUCUCU CGGGU CUUUUUG GGU GGGCUU C G
CAGGGGA GUCUA GAAAAAC CCA CCCGAA G A
UUUAUAGGGACUACGCCCC C C^ C UU G ACCCACC
. 110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | UG at 5p(-14), CNNC at 3p(+17), UGUG in loop |
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Tissue expression
|
|
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| Star sequence |
Tni-Mir-129-P2a_5p* |
| mirBase accession | None |
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| Sequence |
0- CUUUUUGCGGUCUGGGCUUGC -21
Get sequence
|
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| Mature sequence |
Tni-Mir-129-P2a_3p |
| mirBase accession | None |
|---|
| Sequence |
39- AAGCCCUUACCCCAAAAAGCAU -61
Get sequence
|
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