MirGeneDB 3.0
MirGeneDB ID

Sto-Mir-199-P2

Family name MIR-199 (all species)
Species Cloudy Catshark (Scyliorhinus torazame)
MiRBase ID
Paralogues Sto-Mir-199-P1-v1  Sto-Mir-199-P2-v1 
Orthologues Aca-Mir-199-P2-v1  Ami-Mir-199-P2-v1  Bta-Mir-199-P2-v1  Cfa-Mir-199-P2-v1  Cja-Mir-199-P2-v1  Cli-Mir-199-P2-v1  Cmi-Mir-199-P2-v1  Cpi-Mir-199-P2-v1  Cpo-Mir-199-P2-v1  Dno-Mir-199-P2-v1  Dre-Mir-199-P2a-v1  Dre-Mir-199-P2b-v1  Eca-Mir-199-P2-v1  Ete-Mir-199-P2-v1  Gga-Mir-199-P2-v1  Gja-Mir-199-P2-v1  Gmo-Mir-199-P2a-v1  Hsa-Mir-199-P2-v1  Laf-Mir-199-P2-v1  Lch-Mir-199-P2  Loc-Mir-199-P2-v1  Mal-Mir-199-P2a-v1  Mdo-Mir-199-P2-v1  Mml-Mir-199-P2-v1  Mmr-Mir-199-P2-v1  Mmu-Mir-199-P2-v1  Oan-Mir-199-P2-v1  Ocu-Mir-199-P2-v1  Pab-Mir-199-P2-v1  Pbv-Mir-199-P2-v1  Pma-Mir-199-o2-v1  Rno-Mir-199-P2-v1  Sha-Mir-199-P2-v1  Spt-Mir-199-P2  Tgu-Mir-199-P2-v1  Tni-Mir-199-P2a-v1 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCA_003427355_STO_add)		 BFAA01000443.1: 504410-504470 [-]
Clustered miRNAs
(< 50kb from Mir-199-P2-v2)		 Mir-199-P2-v1 BFAA01000443.1: 504410-504470 [-]
Mir-199-P2-v2 BFAA01000443.1: 504410-504470 [-]
Mir-199-P2-v3 BFAA01000443.1: 504410-504470 [-]
Variant

Sto-Mir-199-P2-v2
Seed ACAGUAG
Precursor
(pre-Mir +30nt flank)		 
AAAAACAAGACUACAAUCCCGCUCUGUCUCCCCAGUGUUCAGACUACCUGUUCAGGUCGAUGCUAUUGUACAGUAGUCUGCACAUUGGUUAGACUGUGCGUGGAAAACUCUUCGAGCUGCU
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Structure
        10          20        30        40        50        60
AAAAACAAGACUACAAU-  -|  UCU    CC       U        C   U  GGUCG 
                  CC CGC   GUCU  CCAGUGU CAGACUAC UGU CA     A
                  GG GCG   CAGA  GGUUACA GUCUGAUG ACA GU     U
UCGUCGAGCUUCUCAAAA  U^  UGU    UU       C        -   U  UAUCG 
 .       110       100        90        80         70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
- +
To
Star sequence

Sto-Mir-199-P2-v2_5p*
mirBase accessionNone
Sequence 
0- CCCAGUGUUCAGACUACCUGUUCA -24
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Mature sequence

Sto-Mir-199-P2-v2_3p
mirBase accessionNone
Sequence 
38- UACAGUAGUCUGCACAUUGGUUA -61
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Variant

Sto-Mir-199-P2-v1
Seed CAGUAGU
Precursor
(pre-Mir +30nt flank)		 
AAAAACAAGACUACAAUCCCGCUCUGUCUCCCCAGUGUUCAGACUACCUGUUCAGGUCGAUGCUAUUGUACAGUAGUCUGCACAUUGGUUAGACUGUGCGUGGAAAACUCUUCGAGCUGCU
Get precursor sequence
Structure
        10          20        30        40        50        60
AAAAACAAGACUACAAU-  -|  UCU    CC       U        C   U AGGUCG 
                  CC CGC   GUCU  CCAGUGU CAGACUAC UGU C      A
                  GG GCG   CAGA  GGUUACA GUCUGAUG ACA G      U
UCGUCGAGCUUCUCAAAA  U^  UGU    UU       C        -   U UUAUCG 
 .       110       100        90        80         70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsNo
Tissue expression
- +
To
Star sequence

Sto-Mir-199-P2-v1_5p*
mirBase accessionNone
Sequence 
0- CCCAGUGUUCAGACUACCUGUUC -23
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Mature sequence

Sto-Mir-199-P2-v1_3p
mirBase accessionNone
Sequence 
39- ACAGUAGUCUGCACAUUGGUUA -61
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Variant

Sto-Mir-199-P2-v3
Seed AGUAGUC
Precursor
(pre-Mir +30nt flank)		 
AAAAACAAGACUACAAUCCCGCUCUGUCUCCCCAGUGUUCAGACUACCUGUUCAGGUCGAUGCUAUUGUACAGUAGUCUGCACAUUGGUUAGACUGUGCGUGGAAAACUCUUCGAGCUGCU
Get precursor sequence
Structure
        10          20        30        40        50        60
AAAAACAAGACUACAAU-  -|  UCU    CC       U        C   UCAGGUCG 
                  CC CGC   GUCU  CCAGUGU CAGACUAC UGU        A
                  GG GCG   CAGA  GGUUACA GUCUGAUG ACA        U
UCGUCGAGCUUCUCAAAA  U^  UGU    UU       C        -   UGUUAUCG 
 .       110       100        90        80         70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsNo
Tissue expression
- +
To
Star sequence

Sto-Mir-199-P2-v3_5p*
mirBase accessionNone
Sequence 
0- CCCAGUGUUCAGACUACCUGUU -22
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Mature sequence

Sto-Mir-199-P2-v3_3p
mirBase accessionNone
Sequence 
40- CAGUAGUCUGCACAUUGGUUA -61
Get sequence