MirGeneDB 2.1

MirGeneDB ID

Spt-Mir-205-P2

Family name MIR-205 (all species)
Seed CCUUCAU
Species Tuatara (Sphenodon punctatus)
MiRBase ID
Paralogues Spt-Mir-205-P4 
Orthologues Aca-Mir-205-P2  Ami-Mir-205-P2  Cli-Mir-205-P2  Cmi-Mir-205-P2  Cpi-Mir-205-P2  Gga-Mir-205-P2  Gja-Mir-205-P2  Pbv-Mir-205-P2  Pma-Mir-205-o2  Sto-Mir-205-P2  Tgu-Mir-205-P2 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCA_003113815.1_ASM311381v1_TUATARA)
QEPC01000343.1: 3045689-3045747 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AAGGGGACCCUACGAUCCAUGACUCAGGUGCCCUUCAUUCCACCGGAAUCUGUAGAGACAGAAACCAGAUUUCAGUGAGAUGAAGCGCAUUUGAGAUGGAACUCAUCGCCUCAUGUUUG
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Structure
        10        20          30        40        50         
AAGGGGACCCUACGAUCCAUGA--|        C      UC   C        UAGAGA 
                        CUCAGGUGC CUUCAU  CAC GGAAUCUG      \
                        GAGUUUACG GAAGUA  GUG CUUUAGAC      C
GUUUGUACUCCGCUACUCAAGGUA^        C      GA   A        CAAAGA 
       110       100        90        80        70        60
Deep sequencing
3' NTU Unknown
MotifsCNNC at 3p(+17)
Mature sequence

Spt-Mir-205-P2_5p (predicted)

mirBase accessionNone
Sequence
0- CCCUUCAUUCCACCGGAAUCUG -22
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Star sequence

Spt-Mir-205-P2_3p* (predicted)

mirBase accessionNone
Sequence
37- GAUUUCAGUGAGAUGAAGCGCA -59
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