| MirGeneDB ID | Sme-Mir-1989 |
|---|
| Family name |
MIR-1989 (all species) |
|---|
| Species |
Freshwater planarian (Schmidtea mediterranea) |
|---|
| MiRBase ID |
sme-mir-2154-2
|
|---|
| Paralogues |
|
|---|
| Orthologues |
Agr-Mir-1989
Cte-Mir-1989
Hru-Mir-1989-P4a
Hru-Mir-1989-P4b
Lan-Mir-1989-P1
Lan-Mir-1989-P2
Lan-Mir-1989-P3
Lgi-Mir-1989
Llo-Mir-1989
Mgi-Mir-1989
Mom-Mir-1989
Npo-Mir-1989
Ofu-Mir-1989
Pau-Mir-1989
Pcr-Mir-1989
Pdu-Mir-1989-P5
Pdu-Mir-1989-P6
Pdu-Mir-1989-P7
Pdu-Mir-1989-P8
Pdu-Mir-1989-P9
Pdu-Mir-1989-P10
Pve-Mir-1989
Rph-Mir-1989
Sma-Mir-1989
Snu-Mir-1989
|
|---|
| Node of Origin (locus) |
Platytrochozoa
|
|---|
| Node of Origin (family) |
Platytrochozoa
|
|---|
Genome context
(Sme_GCA_002600895.1_ASM260089v1_alt) |
NNSW01000269_dd_Smes_g4_269: 298203-298269 [-]
UCSC
Ensembl
|
|---|
| Seed |
CAGCUGU |
|---|
Precursor
(pre-Mir +30nt flank) |
GUUGUGAAACUUCGAGUGAUUAUUAGAAUUUCAGCUGUACAAUUGGCAUUGUGUAUGAUAAAUGAAUACAUUAACACAAGUCUUUGUAUAGCUUAUAUUUUUUAUCACUAAUCCACCCUCCUCCCCC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
GUUGUGAAACUUCGAGU----| UAUU UUC UU A AUGAUAAAU
GAU AGAAU AGCUGUACAA GGC UUGUGU \
CUA UUUUA UCGAUAUGUU CUG AACACA G
CCCCCUCCUCCCACCUAAUCA^ UU-- UAU U- - AUUACAUAA
120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
|---|
Tissue expression
|
| Ag |
Ag |
Di |
Gf |
Ne |
Ph |
Se |
Se |
Se |
Se |
Se |
Se |
Se |
Se |
Se |
Se |
Se |
Wh |
Wh |
Wh |
| |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|---|
| Mature sequence |
Sme-Mir-1989_5p |
| mirBase accession | MIMAT0011244 |
|---|
| Sequence |
0- UCAGCUGUACAAUUGGCAUUGUGU -24
Get sequence
|
|---|
| Star sequence |
Sme-Mir-1989_3p* |
| mirBase accession | MIMAT0011412 |
|---|
| Sequence |
45- ACAAGUCUUUGUAUAGCUUAUA -67
Get sequence
|
|---|
