Mir-1989-P7

MirGeneDB ID

Pdu-Mir-1989-P7

Family name

MIR-1989 (all species)

Species

Dumerils clam worm (Platynereis dumerilii)

MiRBase ID

Paralogues

Pdu-Mir-1989-P5 Pdu-Mir-1989-P6 Pdu-Mir-1989-P8 Pdu-Mir-1989-P9 Pdu-Mir-1989-P10

Orthologues

Agr-Mir-1989 Cte-Mir-1989 Lgi-Mir-1989 Llo-Mir-1989 Mgi-Mir-1989 Mom-Mir-1989 Npo-Mir-1989 Ofu-Mir-1989 Pau-Mir-1989 Pcr-Mir-1989 Pve-Mir-1989 Rph-Mir-1989 Sma-Mir-1989 Sme-Mir-1989 Snu-Mir-1989

Node of Origin (locus)

P. dumerilii

Node of Origin (family)

Platytrochozoa

Genome context
(GCA_026936325.1_EMBL_pdum_1.0)

JAPTHN010000010.1: 38602894-38602950 [-] Ensembl

Clustered miRNAs
(< 50kb from Mir-1989-P7)

Mir-1989-P10 JAPTHN010000010.1: 38602059-38602115 [-] Ensembl
Mir-1989-P9 JAPTHN010000010.1: 38602338-38602394 [-] Ensembl
Mir-1989-P8 JAPTHN010000010.1: 38602629-38602685 [-] Ensembl
Mir-1989-P7 JAPTHN010000010.1: 38602894-38602950 [-] Ensembl
Mir-1989-P6 JAPTHN010000010.1: 38603310-38603366 [-] Ensembl
Mir-1989-P5 JAPTHN010000010.1: 38603736-38603796 [-] Ensembl

Seed

CAGCUGU

Precursor
(pre-Mir +30nt flank)

AGAUUACAACUAAUUAGACCUGCACUGAUAUCAGCUGUAACGAUGCCUUCUUGAAAUUUAAACAAGGAGUCAUCUUAACUGCUGACAUUGGUCAGGUCCCAGGCACCACUCAGGUCC

Get precursor sequence

Structure

        10           20        30         40        50        
AGAUUACAACUAAUUAG---|    C  UG  A     UG-   C    C      GAAAU 
                    ACCUG AC  AU UCAGC   UAA GAUG CUUCUU     \
                    UGGAC UG  UA AGUCG   AUU CUAC GAGGAA     U
CCUGGACUCACCACGGACCC^    -  GU  C     UCA   -    U      CAAAU 
     110       100         90        80         70        60

Deep sequencing

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3' NTU

Unknown

Motifs

CNNC at 3p(+17)

Tissue expression

24	24	24	24	24	36	36	36	36	36	48	48	48	48	48	6d	6d	6d	6d	72	72	72	72	72

Mature sequence

Pdu-Mir-1989-P7_5p

mirBase accession

None

Sequence

0- UCAGCUGUAACGAUGCCUUCUU -22

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Star sequence

Pdu-Mir-1989-P7_3p* (predicted)

mirBase accession

None

Sequence

35- GGAGUCAUCUUAACUGCUGACA -57

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