| MirGeneDB ID | Cte-Mir-1989 |
|---|
| Family name |
MIR-1989 (all species) |
|---|
| Seed |
CAGCUGU |
|---|
| Species |
Polychaete worm (Capitella teleta) |
|---|
| MiRBase ID |
cte-mir-1989
|
|---|
| Paralogues |
|
|---|
| Orthologues |
Cgi-Mir-1989
Lan-Mir-1989-P1
Lan-Mir-1989-P2
Lan-Mir-1989-P3
Lgi-Mir-1989
Npo-Mir-1989
Sme-Mir-1989
|
|---|
| Node of Origin (locus) |
Platytrochozoa
|
|---|
| Node of Origin (family) |
Platytrochozoa
|
|---|
Genome context
(Capitella_teleta_v1.0) |
CAPTEscaffold_107: 265961-266017 [-]
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
AUCGUCUCCUUAGAAACCAUCCCGACCAGUUCAGCUGUCAUGAUGCCUUCUUAAGUUUUGAACAAGAGGGCGUCAUAACUGUUGACCUCGAAGGGAACCUUACCUCAUCUGCUUCGC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
AUCGUCUCCUUAGAAACCA--| GACC U U C AAGUU
UCCC AG UCAGC GU AUGAUGCCUUCUU \
AGGG UC AGUUG CA UACUGCGGGAGAA U
CGCUUCGUCUACUCCAUUCCA^ AAGC C U A CAAGU
110 100 90 80 70 60 |
|---|
| Deep sequencing |
|
|---|
| 3' NTU |
Unknown
|
|---|
| Motifs | CNNC at 3p(+17) |
|---|
Tissue expression
|
|
|---|
| Mature sequence |
Cte-Mir-1989_5p (predicted) |
| mirBase accession | MIMAT0009704 |
|---|
| Sequence |
0- UCAGCUGUCAUGAUGCCUUCUU -22
Get sequence
|
|---|
| Star sequence |
Cte-Mir-1989_3p* (predicted) |
| mirBase accession | None |
|---|
| Sequence |
35- GAGGGCGUCAUAACUGUUGACC -57
Get sequence
|
|---|
