| MirGeneDB ID | Lan-Mir-1989-P3 |
|---|
| Family name |
MIR-1989 (all species) |
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| Seed |
CAGCUGU |
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| Species |
Lingula (Lingula anatina) |
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| MiRBase ID |
|
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| Paralogues |
Lan-Mir-1989-P1
Lan-Mir-1989-P2
|
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| Orthologues |
Cgi-Mir-1989
Cte-Mir-1989
Lgi-Mir-1989
Npo-Mir-1989
Sme-Mir-1989
|
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| Node of Origin (locus) |
L. anatina
|
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| Node of Origin (family) |
Platytrochozoa
|
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Genome context
(LinAna_1.0) |
LFEI01000019: 478000-478057 [-]
Ensembl
|
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Precursor
(pre-Mir +30nt flank) |
UGUGAAUGUGAAGAAUUCCUCUGGUGGCCCUCAGCUGUCAUGAUGCCUUCUUGUUGUUGAGACAAAGAAGCCAUUAUGACAAUUGGUGGACAGCAGAGACACAGACUAGCUGUUCCAU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
UGUGAAUGUGAAGAAUUC--| G G C C C GUUGU
CUCUG UG CC UCAG UGUCAUGAUG CUUCUU U
GAGAC AC GG GGUU ACAGUAUUAC GAAGAA G
UACCUUGUCGAUCAGACACA^ G A U A C ACAGA
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
Unknown
|
|---|
| Motifs | No |
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Tissue expression
|
|
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| Mature sequence |
Lan-Mir-1989-P3_5p |
| mirBase accession | None |
|---|
| Sequence |
0- UCAGCUGUCAUGAUGCCUUCUU -22
Get sequence
|
|---|
| Star sequence |
Lan-Mir-1989-P3_3p* (predicted) |
| mirBase accession | None |
|---|
| Sequence |
36- GAAGCCAUUAUGACAAUUGGUG -58
Get sequence
|
|---|
