MirGeneDB 3.0
MirGeneDB ID

Pdu-Mir-1989-P5

Family name MIR-1989 (all species)
Species Dumerils clam worm (Platynereis dumerilii)
MiRBase ID
Paralogues Pdu-Mir-1989-P6  Pdu-Mir-1989-P7  Pdu-Mir-1989-P8  Pdu-Mir-1989-P9  Pdu-Mir-1989-P10 
Orthologues Agr-Mir-1989  Cte-Mir-1989  Lgi-Mir-1989  Llo-Mir-1989  Mgi-Mir-1989  Mom-Mir-1989  Npo-Mir-1989  Ofu-Mir-1989  Pau-Mir-1989  Pcr-Mir-1989  Pve-Mir-1989  Rph-Mir-1989  Sma-Mir-1989  Sme-Mir-1989  Snu-Mir-1989 
Node of Origin (locus) P. dumerilii
Node of Origin (family) Platytrochozoa
Genome context
(GCA_026936325.1_EMBL_pdum_1.0)		 JAPTHN010000010.1: 38603736-38603796 [-] Ensembl
Clustered miRNAs
(< 50kb from Mir-1989-P5)		 Mir-1989-P10 JAPTHN010000010.1: 38602059-38602115 [-] Ensembl
Mir-1989-P9 JAPTHN010000010.1: 38602338-38602394 [-] Ensembl
Mir-1989-P8 JAPTHN010000010.1: 38602629-38602685 [-] Ensembl
Mir-1989-P7 JAPTHN010000010.1: 38602894-38602950 [-] Ensembl
Mir-1989-P6 JAPTHN010000010.1: 38603310-38603366 [-] Ensembl
Mir-1989-P5 JAPTHN010000010.1: 38603736-38603796 [-] Ensembl
Seed CAGCUGU
Precursor
(pre-Mir +30nt flank)		 
ACCAAGAAAUUACUCAAACUUGCAUCGGUGUCAGCUGUCGCGAUGCCUUCUUUUCACAAUUUCUAGCAAGAAGGUGUUACCACUGCUGACACCGAAGCAUGUUAUUCGCCUUCAAUGACCA
Get precursor sequence
Structure
        10          20        30        40        50          
ACCAAGAAAUUACUCAA--| U   A           U  CGC           UUCACAA 
                   AC UGC UCGGUGUCAGC GU   GAUGCCUUCUU       \
                   UG ACG AGCCACAGUCG CA   UUGUGGAAGAA       U
ACCAGUAACUUCCGCUUAU^ U   A           U  CCA           CGAUCUU 
 .       110       100        90        80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
24 24 24 24 24 36 36 36 36 36 48 48 48 48 48 6d 6d 6d 6d 72 72 72 72 72
Mature sequence

Pdu-Mir-1989-P5_5p
mirBase accessionNone
Sequence 
0- UCAGCUGUCGCGAUGCCUUCUU -22
Get sequence
Star sequence

Pdu-Mir-1989-P5_3p*
mirBase accessionNone
Sequence 
39- GAAGGUGUUACCACUGCUGACA -61
Get sequence