MirGeneDB 3.0
MirGeneDB ID

Rno-Mir-876

Family name MIR-876 (all species)
Species Norway rat (Rattus norvegicus)
MiRBase ID rno-mir-876
Paralogues
Orthologues Bta-Mir-876-v1  Cfa-Mir-876-v1  Cja-Mir-876-v1  Cpo-Mir-876-v1  Dno-Mir-876-v1  Eca-Mir-876-v1  Ete-Mir-876  Hsa-Mir-876-v1  Laf-Mir-876-v1  Mml-Mir-876-v1  Mmr-Mir-876  Ocu-Mir-876-v1  Pab-Mir-876-v1 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(rn6)		 chr5: 52461656-52461714 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-876-v1)		 Mir-876-v2 chr5: 52461654-52461716 [-] UCSC Ensembl
Mir-876-v1 chr5: 52461656-52461714 [-] UCSC Ensembl
Mir-873-v1 chr5: 52481085-52481143 [-] UCSC Ensembl
Mir-873-v2 chr5: 52481086-52481142 [-] UCSC Ensembl
Variant

Rno-Mir-876-v1
Seed GGUGGUU
Precursor
(pre-Mir +30nt flank)		 
CAAGCAUUACAUAAACUGUCAAGUGCUGUGGAUUUCUCUGUGAAUCACCAUAUCAAAUCUAAUGUGGUGGUGGUUUGCAAAGUAAUUCAUAGUGCUUCAUAGAUGCUCCUACAGUUGCU
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Structure
        10          20        30        40        50         
CAAGCAUUACAUAAACU--| C   UG         U  C  UG         AUCAAAU 
                   GU AAG  CUGUGGAUU CU UG  AAUCACCAU       \
                   UA UUC  GAUACUUAA GA AC  UUGGUGGUG       C
UCGUUGACAUCCUCGUAGA^ C   GU         U  A  GU         GUGUAAU 
       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU Unknown
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
- +
Dr Dr Ad Bi Bi Bi Bi Br Br Br Br Ce Ce Ce Ce Co Co Co Co Du Du Du Du Fa He He He Hi Hi Il Il Je Je Ki Ki Ki Ki Ki La Li Li Li Li Li Li Lu Me Me Mu Ov Pa Pa Pa Sk Sm So So So So Sp St St St St Te Te Th Ut Wh
Star sequence

Rno-Mir-876-v1_5p* (predicted)
mirBase accessionMIMAT0012843
Sequence 
0- GAUUUCUCUGUGAAUCACCAUA -22
Get sequence
Proposed targets microrna.org: MIMAT0012843
TargetScanVert: rno-miR-876
miRDB: MIMAT0012843
Mature sequence

Rno-Mir-876-v1_3p (predicted)
mirBase accessionNone
Sequence 
37- UGGUGGUUUGCAAAGUAAUUCA -59
Get sequence
Variant

Rno-Mir-876-v2
Seed GGAUUUC
Precursor
(pre-Mir +30nt flank)		 
UACAAGCAUUACAUAAACUGUCAAGUGCUGUGGAUUUCUCUGUGAAUCACCAUAUCAAAUCUAAUGUGGUGGUGGUUUGCAAAGUAAUUCAUAGUGCUUCAUAGAUGCUCCUACAGUUGCUCU
Get precursor sequence
Structure
        10          20        30        40        50        60 
UACAAGCAUUACAUAAA--|   C   UG         U  C  UG        UAUCAAAU 
                   CUGU AAG  CUGUGGAUU CU UG  AAUCACCA        \
                   GAUA UUC  GAUACUUAA GA AC  UUGGUGGU        C
UCUCGUUGACAUCCUCGUA^   C   GU         U  A  GU        GGUGUAAU 
 120       110       100        90        80        70
Deep sequencing
Go to detailed chart
3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
- +
Dr Dr Ad Bi Bi Bi Bi Br Br Br Br Ce Ce Ce Ce Co Co Co Co Du Du Du Du Fa He He He Hi Hi Il Il Je Je Ki Ki Ki Ki Ki La Li Li Li Li Li Li Lu Me Me Mu Ov Pa Pa Pa Sk Sm So So So So Sp St St St St Te Te Th Ut Wh
Mature sequence

Rno-Mir-876-v2_5p
mirBase accessionMIMAT0012843
Sequence 
0- UGGAUUUCUCUGUGAAUCACCA -22
Get sequence
Proposed targets microrna.org: MIMAT0012843
TargetScanVert: rno-miR-876
miRDB: MIMAT0012843
Star sequence

Rno-Mir-876-v2_3p*
mirBase accessionNone
Sequence 
41- GUGGUUUGCAAAGUAAUUCAUA -63
Get sequence