MirGeneDB 3.0
MirGeneDB ID

Bta-Mir-876

Family name MIR-876 (all species)
Species Cow (Bos taurus)
MiRBase ID bta-mir-876
Paralogues
Orthologues Cfa-Mir-876-v1  Cja-Mir-876-v1  Cpo-Mir-876-v1  Dno-Mir-876-v1  Eca-Mir-876-v1  Ete-Mir-876  Hsa-Mir-876-v1  Laf-Mir-876-v1  Mml-Mir-876-v1  Mmr-Mir-876  Ocu-Mir-876-v1  Pab-Mir-876-v1  Rno-Mir-876-v1 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(GCF_002263795.1_ARS-UCD1.2_BTA)		 NC_037335.1: 15239274-15239332 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-876-v1)		 Mir-873-v1 NC_037335.1: 15215608-15215666 [+] UCSC Ensembl
Mir-873-v2 NC_037335.1: 15215609-15215665 [+] UCSC Ensembl
Mir-876-v2 NC_037335.1: 15239272-15239334 [+] UCSC Ensembl
Mir-876-v1 NC_037335.1: 15239274-15239332 [+] UCSC Ensembl
Variant

Bta-Mir-876-v1
Seed GGUGGUU
Precursor
(pre-Mir +30nt flank)		 
CAAGCUGUACCCAAACUGUGAAGUGCUGUGGAUUUCUUUGUGAAUCACCAUAUCUAAGCUAAUGUGGUGGUGGUUUACAAAGUAAUUCAUAGUGCUUCACAGGUGCUUCUGCAGUUGAU
Get precursor sequence
Structure
        10          20        30        40        50         
CAAGCUGUACCCAAACU--|     UG         U                AUCUAAG 
                   GUGAAG  CUGUGGAUU CUUUGUGAAUCACCAU       \
                   CACUUC  GAUACUUAA GAAACAUUUGGUGGUG       C
UAGUUGACGUCUUCGUGGA^     GU         U                GUGUAAU 
       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
- +
Ad Bo Br Ce Co Co De Fe He Hy Ir Ki La Lo Mi No Op Or Pe Re Su Te
Star sequence

Bta-Mir-876-v1_5p*
mirBase accessionMIMAT0009380
Sequence 
0- GAUUUCUUUGUGAAUCACCAUA -22
Get sequence
Proposed targets TargetScanVert: bta-miR-876
Mature sequence

Bta-Mir-876-v1_3p
mirBase accessionNone
Sequence 
37- UGGUGGUUUACAAAGUAAUUCA -59
Get sequence
Variant

Bta-Mir-876-v2
Seed GGAUUUC
Precursor
(pre-Mir +30nt flank)		 
ACCAAGCUGUACCCAAACUGUGAAGUGCUGUGGAUUUCUUUGUGAAUCACCAUAUCUAAGCUAAUGUGGUGGUGGUUUACAAAGUAAUUCAUAGUGCUUCACAGGUGCUUCUGCAGUUGAUCU
Get precursor sequence
Structure
        10          20        30        40        50        60 
ACCAAGCUGUACCCAAA--|       UG         U               UAUCUAAG 
                   CUGUGAAG  CUGUGGAUU CUUUGUGAAUCACCA        \
                   GACACUUC  GAUACUUAA GAAACAUUUGGUGGU        C
UCUAGUUGACGUCUUCGUG^       GU         U               GGUGUAAU 
 120       110       100        90        80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Ad Bo Br Ce Co Co De Fe He Hy Ir Ki La Lo Mi No Op Or Pe Re Su Te
Mature sequence

Bta-Mir-876-v2_5p
mirBase accessionMIMAT0009380
Sequence 
0- UGGAUUUCUUUGUGAAUCACCA -22
Get sequence
Proposed targets TargetScanVert: bta-miR-876
Star sequence

Bta-Mir-876-v2_3p*
mirBase accessionNone
Sequence 
41- GUGGUUUACAAAGUAAUUCAUA -63
Get sequence