MirGeneDB 3.0
MirGeneDB ID

Bta-Mir-873

Family name MIR-873 (all species)
Species Cow (Bos taurus)
MiRBase ID bta-mir-873
Paralogues
Orthologues Cfa-Mir-873-v1  Cja-Mir-873-v1  Cpo-Mir-873-v1  Dno-Mir-873-v1  Eca-Mir-873-v1  Ete-Mir-873-v1  Hsa-Mir-873-v1  Laf-Mir-873  Mdo-Mir-873-v1  Mml-Mir-873-v1  Mmr-Mir-873  Mmu-Mir-873-v1  Neu-Mir-873-v1  Oan-Mir-873-v1  Ocu-Mir-873-v1  Pab-Mir-873-v1  Rno-Mir-873-v1 
Node of Origin (locus) Mammalia
Node of Origin (family) Mammalia
Genome context
(GCF_002263795.1_ARS-UCD1.2_BTA)		 NC_037335.1: 15215608-15215666 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-873-v1)		 Mir-873-v1 NC_037335.1: 15215608-15215666 [+] UCSC Ensembl
Mir-873-v2 NC_037335.1: 15215609-15215665 [+] UCSC Ensembl
Mir-876-v2 NC_037335.1: 15239272-15239334 [+] UCSC Ensembl
Mir-876-v1 NC_037335.1: 15239274-15239332 [+] UCSC Ensembl
Variant

Bta-Mir-873-v1
Seed GCAGGAA
Precursor
(pre-Mir +30nt flank)		 
GGGUGCCUGCUUACUGAGUUUGUGUGCAUUUGCAGGAACUUGUGAGUCUCCUAUUGAACAUGAACAGGAGGCUGAUGAGUUCCCGGGAACACCCACAAAUCUUCCUACUCAUUUCUCCU
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Structure
        10          20        30        40        50         
GGGUGCCUGCUUACUGA--|      UGCAUUUGCA      UG G        AUUGAA 
                   GUUUGUG          GGAACU  U AGUCUCCU      \
                   UAAACAC          CCUUGA  A UCGGAGGA      C
UCCUCUUUACUCAUCCUUC^      CCACAAGGGC      GU G        CAAGUA 
       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Ad Bo Br Ce Co Co De Fe He Hy Ir Ki La Lo Mi No Op Or Pe Re Su Te
Mature sequence

Bta-Mir-873-v1_5p
mirBase accessionMIMAT0009377
Sequence 
0- UGCAGGAACUUGUGAGUCUCCU -22
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Proposed targets TargetScanVert: bta-miR-873
Star sequence

Bta-Mir-873-v1_3p*
mirBase accessionNone
Sequence 
37- GAGGCUGAUGAGUUCCCGGGAA -59
Get sequence
Variant

Bta-Mir-873-v2
Seed CAGGAAC
Precursor
(pre-Mir +30nt flank)		 
GGUGCCUGCUUACUGAGUUUGUGUGCAUUUGCAGGAACUUGUGAGUCUCCUAUUGAACAUGAACAGGAGGCUGAUGAGUUCCCGGGAACACCCACAAAUCUUCCUACUCAUUUCUCC
Get precursor sequence
Structure
        10          20        30        40        50        
GGUGCCUGCUUACUGAG--|     UGCAUUUGCA      UG G        AUUGAA 
                   UUUGUG          GGAACU  U AGUCUCCU      \
                   AAACAC          CCUUGA  A UCGGAGGA      C
CCUCUUUACUCAUCCUUCU^     CCACAAGGGC      GU G        CAAGUA 
     110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Ad Bo Br Ce Co Co De Fe He Hy Ir Ki La Lo Mi No Op Or Pe Re Su Te
Mature sequence

Bta-Mir-873-v2_5p
mirBase accessionMIMAT0009377
Sequence 
0- GCAGGAACUUGUGAGUCUCCUA -22
Get sequence
Proposed targets TargetScanVert: bta-miR-873
Star sequence

Bta-Mir-873-v2_3p*
mirBase accessionNone
Sequence 
35- GGAGGCUGAUGAGUUCCCGGGA -57
Get sequence