MirGeneDB 3.0
MirGeneDB ID

Eca-Mir-873

Family name MIR-873 (all species)
Species Horse (Equus caballus)
MiRBase ID eca-mir-873
Paralogues
Orthologues Bta-Mir-873-v1  Cfa-Mir-873-v1  Cja-Mir-873-v1  Cpo-Mir-873-v1  Dno-Mir-873-v1  Ete-Mir-873-v1  Hsa-Mir-873-v1  Laf-Mir-873  Mdo-Mir-873-v1  Mml-Mir-873-v1  Mmr-Mir-873  Mmu-Mir-873-v1  Neu-Mir-873-v1  Oan-Mir-873-v1  Ocu-Mir-873-v1  Pab-Mir-873-v1  Rno-Mir-873-v1 
Node of Origin (locus) Mammalia
Node of Origin (family) Mammalia
Genome context
(GCA_002863925.1_EquCab3.0)		 CM009170.1: 46232418-46232476 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-873-v1)		 Mir-876-v2 CM009170.1: 46212005-46212067 [-] UCSC Ensembl
Mir-876-v1 CM009170.1: 46212007-46212065 [-] UCSC Ensembl
Mir-873-v1 CM009170.1: 46232418-46232476 [-] UCSC Ensembl
Mir-873-v2 CM009170.1: 46232419-46232475 [-] UCSC Ensembl
Variant

Eca-Mir-873-v1
Seed GCAGGAA
Precursor
(pre-Mir +30nt flank)		 
GUACCUGCUUAAAAGAAGUUUGUGUGCAUUUGCAGGAACUUGUGAGUCUCCUAUUGAAAAUGAACAGGAGACUGAUGAGUUCCCGGGAACACCCACAAAUCUUCCUACUCAUUUCUGCU
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Structure
        10          20        30        40        50         
GUACCUGCUUAAAAGAA--|      UGCAUUUGCA      UG G        AUUGAA 
                   GUUUGUG          GGAACU  U AGUCUCCU      \
                   UAAACAC          CCUUGA  A UCAGAGGA      A
UCGUCUUUACUCAUCCUUC^      CCACAAGGGC      GU G        CAAGUA 
       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Ps Bo Ca Em En En En En En En En Gl He He Ho Im Ki Li Lo Lu Ma Ma Mi Pl Sp Te Tr Ut Ut Yo
Mature sequence

Eca-Mir-873-v1_5p
mirBase accessionMIMAT0013120
Sequence 
0- UGCAGGAACUUGUGAGUCUCCU -22
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Star sequence

Eca-Mir-873-v1_3p*
mirBase accessionNone
Sequence 
37- GAGACUGAUGAGUUCCCGGGAA -59
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Variant

Eca-Mir-873-v2
Seed CAGGAAC
Precursor
(pre-Mir +30nt flank)		 
UACCUGCUUAAAAGAAGUUUGUGUGCAUUUGCAGGAACUUGUGAGUCUCCUAUUGAAAAUGAACAGGAGACUGAUGAGUUCCCGGGAACACCCACAAAUCUUCCUACUCAUUUCUGC
Get precursor sequence
Structure
        10          20        30        40        50        
UACCUGCUUAAAAGAAG--|     UGCAUUUGCA      UG G        AUUGAA 
                   UUUGUG          GGAACU  U AGUCUCCU      \
                   AAACAC          CCUUGA  A UCAGAGGA      A
CGUCUUUACUCAUCCUUCU^     CCACAAGGGC      GU G        CAAGUA 
     110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Ps Bo Ca Em En En En En En En En Gl He He Ho Im Ki Li Lo Lu Ma Ma Mi Pl Sp Te Tr Ut Ut Yo
Mature sequence

Eca-Mir-873-v2_5p
mirBase accessionMIMAT0013120
Sequence 
0- GCAGGAACUUGUGAGUCUCCUA -22
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Star sequence

Eca-Mir-873-v2_3p*
mirBase accessionNone
Sequence 
35- GGAGACUGAUGAGUUCCCGGGA -57
Get sequence