MirGeneDB 3.0
MirGeneDB ID

Hsa-Mir-873

Family name MIR-873 (all species)
Species Human (Homo sapiens)
MiRBase ID hsa-mir-873
Paralogues
Orthologues Bta-Mir-873-v1  Cfa-Mir-873-v1  Cja-Mir-873-v1  Cpo-Mir-873-v1  Dno-Mir-873-v1  Eca-Mir-873-v1  Ete-Mir-873-v1  Laf-Mir-873  Mdo-Mir-873-v1  Mml-Mir-873-v1  Mmr-Mir-873  Mmu-Mir-873-v1  Neu-Mir-873-v1  Oan-Mir-873-v1  Ocu-Mir-873-v1  Pab-Mir-873-v1  Rno-Mir-873-v1 
Node of Origin (locus) Mammalia
Node of Origin (family) Mammalia
Genome context
(hg38)		 chr9: 28888888-28888946 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-873-v1)		 Mir-876-v2 chr9: 28863634-28863696 [-] UCSC Ensembl
Mir-876-v1 chr9: 28863636-28863694 [-] UCSC Ensembl
Mir-873-v1 chr9: 28888888-28888946 [-] UCSC Ensembl
Mir-873-v2 chr9: 28888889-28888945 [-] UCSC Ensembl
Variant

Hsa-Mir-873-v1
Seed GCAGGAA
Precursor
(pre-Mir +30nt flank)		 
GUUCCUGCUUAGAAUAAGUUUGUGUGCAUUUGCAGGAACUUGUGAGUCUCCUAUUGAAAAUGAACAGGAGACUGAUGAGUUCCCGGGAACACCCACAAAUCUUCCUACUCAUUUCUACU
Get precursor sequence
Structure
        10          20        30        40        50         
GUUCCUGCUUAGAAUAA--|      UGCAUUUGCA      UG G        AUUGAA 
                   GUUUGUG          GGAACU  U AGUCUCCU      \
                   UAAACAC          CCUUGA  A UCAGAGGA      A
UCAUCUUUACUCAUCCUUC^      CCACAAGGGC      GU G        CAAGUA 
       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Dc Dc Dr Dr Xp Xp Bl Br Br Ce Ce Co Fo He Ki Le Li Li Lu Pa Pl Pl Sk Sk Sk Sm Sp Sp St Te Th Ut
Mature sequence

Hsa-Mir-873-v1_5p
mirBase accessionMIMAT0004953
Sequence 
0- UGCAGGAACUUGUGAGUCUCCU -22
Get sequence
Proposed targets microrna.org: MIMAT0004953
TargetScanVert: hsa-miR-873-5p.1
TargetMiner: hsa-miR-873-5p
miRDB: MIMAT0004953
Co-mature sequence

Hsa-Mir-873-v1_3p
mirBase accessionMIMAT0022717
Sequence 
37- GAGACUGAUGAGUUCCCGGGAA -59
Get sequence
Proposed targets TargetScanVert: hsa-miR-873-3p
TargetMiner: hsa-miR-873-3p
miRDB: MIMAT0022717
Variant

Hsa-Mir-873-v2
Seed CAGGAAC
Precursor
(pre-Mir +30nt flank)		 
UUCCUGCUUAGAAUAAGUUUGUGUGCAUUUGCAGGAACUUGUGAGUCUCCUAUUGAAAAUGAACAGGAGACUGAUGAGUUCCCGGGAACACCCACAAAUCUUCCUACUCAUUUCUAC
Get precursor sequence
Structure
        10          20        30        40        50        
UUCCUGCUUAGAAUAAG--|     UGCAUUUGCA      UG G        AUUGAA 
                   UUUGUG          GGAACU  U AGUCUCCU      \
                   AAACAC          CCUUGA  A UCAGAGGA      A
CAUCUUUACUCAUCCUUCU^     CCACAAGGGC      GU G        CAAGUA 
     110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Dc Dc Dr Dr Xp Xp Bl Br Br Ce Ce Co Fo He Ki Le Li Li Lu Pa Pl Pl Sk Sk Sk Sm Sp Sp St Te Th Ut
Mature sequence

Hsa-Mir-873-v2_5p
mirBase accessionMIMAT0004953
Sequence 
0- GCAGGAACUUGUGAGUCUCCUA -22
Get sequence
Proposed targets microrna.org: MIMAT0004953
TargetScanVert: hsa-miR-873-5p.1
TargetMiner: hsa-miR-873-5p
miRDB: MIMAT0004953
Star sequence

Hsa-Mir-873-v2_3p*
mirBase accessionMIMAT0022717
Sequence 
35- GGAGACUGAUGAGUUCCCGGGA -57
Get sequence
Proposed targets TargetScanVert: hsa-miR-873-3p
TargetMiner: hsa-miR-873-3p
miRDB: MIMAT0022717