MirGeneDB 3.0
MirGeneDB ID

Rno-Mir-873

Family name MIR-873 (all species)
Species Norway rat (Rattus norvegicus)
MiRBase ID rno-mir-873
Paralogues
Orthologues Bta-Mir-873-v1  Cfa-Mir-873-v1  Cja-Mir-873-v1  Cpo-Mir-873-v1  Dno-Mir-873-v1  Eca-Mir-873-v1  Ete-Mir-873-v1  Hsa-Mir-873-v1  Laf-Mir-873  Mdo-Mir-873-v1  Mml-Mir-873-v1  Mmr-Mir-873  Mmu-Mir-873-v1  Neu-Mir-873-v1  Oan-Mir-873-v1  Ocu-Mir-873-v1  Pab-Mir-873-v1 
Node of Origin (locus) Mammalia
Node of Origin (family) Mammalia
Genome context
(rn6)		 chr5: 52481085-52481143 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-873-v1)		 Mir-876-v2 chr5: 52461654-52461716 [-] UCSC Ensembl
Mir-876-v1 chr5: 52461656-52461714 [-] UCSC Ensembl
Mir-873-v1 chr5: 52481085-52481143 [-] UCSC Ensembl
Mir-873-v2 chr5: 52481086-52481142 [-] UCSC Ensembl
Variant

Rno-Mir-873-v1
Seed GCAGGAA
Precursor
(pre-Mir +30nt flank)		 
ACACCUGCUUAAAAUCAGUUUGUGUGCAUUUGCAGGAACUUGUGAGUCUCCUAUUGAAAAUGGACAGGAGACUGACAAGUUCCCGGGAACACCCACAAAUCUUCCUACUCAUUUCUACC
Get precursor sequence
Structure
        10          20        30        40        50         
ACACCUGCUUAAAAUCA--|      UGCAUUUGCA         G        AUUGAA 
                   GUUUGUG          GGAACUUGU AGUCUCCU      \
                   UAAACAC          CCUUGAACA UCAGAGGA      A
CCAUCUUUACUCAUCCUUC^      CCACAAGGGC         G        CAGGUA 
       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Dr Dr Ad Bi Bi Bi Bi Br Br Br Br Ce Ce Ce Ce Co Co Co Co Du Du Du Du Fa He He He Hi Hi Il Il Je Je Ki Ki Ki Ki Ki La Li Li Li Li Li Li Lu Me Me Mu Ov Pa Pa Pa Sk Sm So So So So Sp St St St St Te Te Th Ut Wh
Mature sequence

Rno-Mir-873-v1_5p
mirBase accessionMIMAT0005339
Sequence 
0- UGCAGGAACUUGUGAGUCUCCU -22
Get sequence
Proposed targets microrna.org: MIMAT0005339
TargetScanVert: rno-miR-873-5p
miRDB: MIMAT0005339
Star sequence

Rno-Mir-873-v1_3p*
mirBase accessionMIMAT0017318
Sequence 
37- GAGACUGACAAGUUCCCGGGAA -59
Get sequence
Proposed targets TargetScanVert: rno-miR-873-3p
miRDB: MIMAT0017318
Variant

Rno-Mir-873-v2
Seed CAGGAAC
Precursor
(pre-Mir +30nt flank)		 
CACCUGCUUAAAAUCAGUUUGUGUGCAUUUGCAGGAACUUGUGAGUCUCCUAUUGAAAAUGGACAGGAGACUGACAAGUUCCCGGGAACACCCACAAAUCUUCCUACUCAUUUCUAC
Get precursor sequence
Structure
        10          20        30        40        50        
CACCUGCUUAAAAUCAG--|     UGCAUUUGCA         G        AUUGAA 
                   UUUGUG          GGAACUUGU AGUCUCCU      \
                   AAACAC          CCUUGAACA UCAGAGGA      A
CAUCUUUACUCAUCCUUCU^     CCACAAGGGC         G        CAGGUA 
     110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Dr Dr Ad Bi Bi Bi Bi Br Br Br Br Ce Ce Ce Ce Co Co Co Co Du Du Du Du Fa He He He Hi Hi Il Il Je Je Ki Ki Ki Ki Ki La Li Li Li Li Li Li Lu Me Me Mu Ov Pa Pa Pa Sk Sm So So So So Sp St St St St Te Te Th Ut Wh
Mature sequence

Rno-Mir-873-v2_5p
mirBase accessionMIMAT0005339
Sequence 
0- GCAGGAACUUGUGAGUCUCCUA -22
Get sequence
Proposed targets microrna.org: MIMAT0005339
TargetScanVert: rno-miR-873-5p
miRDB: MIMAT0005339
Star sequence

Rno-Mir-873-v2_3p*
mirBase accessionMIMAT0017318
Sequence 
35- GGAGACUGACAAGUUCCCGGGA -57
Get sequence
Proposed targets TargetScanVert: rno-miR-873-3p
miRDB: MIMAT0017318