MirGeneDB 3.0
MirGeneDB ID

Rno-Mir-140-P2

Family name MIR-140 (all species)
Species Norway rat (Rattus norvegicus)
MiRBase ID rno-mir-140
Paralogues
Orthologues Aca-Mir-140-P2-v1  Ami-Mir-140-P2-v1  Bta-Mir-140-P2-v1  Cfa-Mir-140-P2-v1  Cja-Mir-140-P2-v1  Cli-Mir-140-P2-v1  Cmi-Mir-140-P2-v1  Cpi-Mir-140-P2-v1  Cpo-Mir-140-P2-v1  Dno-Mir-140-P2-v1  Dre-Mir-140-P2-v1  Eca-Mir-140-P2-v1  Ete-Mir-140-P2-v1  Gga-Mir-140-P2-v1  Gja-Mir-140-P2-v1  Gmo-Mir-140-P2-v1  Hsa-Mir-140-P2-v1  Lch-Mir-140-P2  Loc-Mir-140-P2-v1  Mal-Mir-140-P2-v1  Mdo-Mir-140-P2-v1  Mml-Mir-140-P2-v1  Mmr-Mir-140-P2-v1  Mmu-Mir-140-P2-v1  Mun-Mir-140-P2-v1  Neu-Mir-140-P2-v1  Oan-Mir-140-P2-v1  Ocu-Mir-140-P2-v1  Pab-Mir-140-P2-v1  Pma-Mir-140-o2  Sha-Mir-140-P2-v1  Spt-Mir-140-P2  Sto-Mir-140-P2-v1  Tgu-Mir-140-P2-v1  Tni-Mir-140-P2-v1  Xla-Mir-140-P2a-v1  Xla-Mir-140-P2b-v1  Xtr-Mir-140-P2-v1 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(rn6)		 chr19: 39608972-39609033 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-140-P2-v1)		 Mir-140-P2-v1 chr19: 39608972-39609033 [+] UCSC Ensembl
Mir-140-P2-v2 chr19: 39608972-39609033 [+] UCSC Ensembl
Variant

Rno-Mir-140-P2-v1
Seed CCACAGG
Precursor
(pre-Mir +30nt flank)		 
CCGCCCUGUGUGUCUCUCUCUGUGUCCUGCCAGUGGUUUUACCCUAUGGUAGGUUACAUCAUGCUGUUCUACCACAGGGUAGAACCACGGACAGGAUACUGGAGCACCCUCUGCAUCGAAGG
Get precursor sequence
Structure
        10         20          30        40        50        60
CCGCCCUGUGUGUCUCU-    -        -| A             A      GUUACAU 
                  CUCU GUGUCCUG CC GUGGUUUUACCCU UGGUAG       C
                  GAGG CAUAGGAC GG CACCAAGAUGGGA ACCAUC       A
GGAAGCUACGUCUCCCAC    U        A^ -             C      UUGUCGU 
120       110       100        90         80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Dr Dr Ad Bi Bi Bi Bi Br Br Br Br Ce Ce Ce Ce Co Co Co Co Du Du Du Du Fa He He He Hi Hi Il Il Je Je Ki Ki Ki Ki Ki La Li Li Li Li Li Li Lu Me Me Mu Ov Pa Pa Pa Sk Sm So So So So Sp St St St St Te Te Th Ut Wh
Star sequence

Rno-Mir-140-P2-v1_5p*
mirBase accessionMIMAT0000573
Sequence 
0- CAGUGGUUUUACCCUAUGGUAG -22
Get sequence
Proposed targets microrna.org: MIMAT0000573
TargetScanVert: rno-miR-140-5p
miRDB: MIMAT0000573
Mature sequence

Rno-Mir-140-P2-v1_3p
mirBase accessionMIMAT0000574
Sequence 
40- ACCACAGGGUAGAACCACGGAC -62
Get sequence
Proposed targets microrna.org: MIMAT0000574
TargetScanVert: rno-miR-140-3p
miRDB: MIMAT0000574
Variant

Rno-Mir-140-P2-v2
Seed ACCACAG
Precursor
(pre-Mir +30nt flank)		 
CCGCCCUGUGUGUCUCUCUCUGUGUCCUGCCAGUGGUUUUACCCUAUGGUAGGUUACAUCAUGCUGUUCUACCACAGGGUAGAACCACGGACAGGAUACUGGAGCACCCUCUGCAUCGAAGG
Get precursor sequence
Structure
        10         20          30        40        50        60
CCGCCCUGUGUGUCUCU-    -        -| A             A       UUACAU 
                  CUCU GUGUCCUG CC GUGGUUUUACCCU UGGUAGG      C
                  GAGG CAUAGGAC GG CACCAAGAUGGGA ACCAUCU      A
GGAAGCUACGUCUCCCAC    U        A^ -             C       UGUCGU 
120       110       100        90         80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Dr Dr Ad Bi Bi Bi Bi Br Br Br Br Ce Ce Ce Ce Co Co Co Co Du Du Du Du Fa He He He Hi Hi Il Il Je Je Ki Ki Ki Ki Ki La Li Li Li Li Li Li Lu Me Me Mu Ov Pa Pa Pa Sk Sm So So So So Sp St St St St Te Te Th Ut Wh
Star sequence

Rno-Mir-140-P2-v2_5p*
mirBase accessionMIMAT0000573
Sequence 
0- CAGUGGUUUUACCCUAUGGUAGG -23
Get sequence
Proposed targets microrna.org: MIMAT0000573
TargetScanVert: rno-miR-140-5p
miRDB: MIMAT0000573
Mature sequence

Rno-Mir-140-P2-v2_3p
mirBase accessionMIMAT0000574
Sequence 
39- UACCACAGGGUAGAACCACGGAC -62
Get sequence
Proposed targets microrna.org: MIMAT0000574
TargetScanVert: rno-miR-140-3p
miRDB: MIMAT0000574