MirGeneDB 3.0
MirGeneDB ID

Pma-Mir-140-o2

Family name MIR-140 (all species)
Species Sea Lamprey (Petromyzon marinus)
MiRBase ID
Paralogues Pma-Mir-140-o1  Pma-Mir-140-o3 
Orthologues Aca-Mir-140-P2-v1  Ami-Mir-140-P2-v1  Bta-Mir-140-P2-v1  Cfa-Mir-140-P2-v1  Cja-Mir-140-P2-v1  Cli-Mir-140-P2-v1  Cmi-Mir-140-P2-v1  Cpi-Mir-140-P2-v1  Cpo-Mir-140-P2-v1  Dno-Mir-140-P2-v1  Dre-Mir-140-P2-v1  Eca-Mir-140-P2-v1  Ete-Mir-140-P2-v1  Gga-Mir-140-P2-v1  Gja-Mir-140-P2-v1  Gmo-Mir-140-P2-v1  Hsa-Mir-140-P2-v1  Lch-Mir-140-P2  Loc-Mir-140-P2-v1  Mal-Mir-140-P2-v1  Mdo-Mir-140-P2-v1  Mml-Mir-140-P2-v1  Mmr-Mir-140-P2-v1  Mmu-Mir-140-P2-v1  Mun-Mir-140-P2-v1  Neu-Mir-140-P2-v1  Oan-Mir-140-P2-v1  Ocu-Mir-140-P2-v1  Pab-Mir-140-P2-v1  Rno-Mir-140-P2-v1  Sha-Mir-140-P2-v1  Spt-Mir-140-P2  Sto-Mir-140-P2-v1  Tgu-Mir-140-P2-v1  Tni-Mir-140-P2-v1  Xla-Mir-140-P2a-v1  Xla-Mir-140-P2b-v1  Xtr-Mir-140-P2-v1 
Node of Origin (locus) P. marinus
Node of Origin (family) Vertebrata
Genome context
(GCF_010993605.1_kPetMar1.pri_genomic)		 NC_046093.1: 1829730-1829791 [-] UCSC Ensembl
Seed AGUGGUU
Precursor
(pre-Mir +30nt flank)		 
UGCCCCCCGUGCAUACCCCGCGUGCCCCGCCAGUGGUUUUACCCUAUGGUAGGUGAGCCUGCCAAGCGCUACCACAGGGUAGAACCACGGACGGGUCGCGUGGAGGAGCCACGCGGAGCCGG
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Structure
        10          20         30        40        50        60
UGCCCCCCGUGCAUACC--       C    -| A             A      GUGAGCC 
                   CCGCGUG CCCG CC GUGGUUUUACCCU UGGUAG       U
                   GGUGCGC GGGC GG CACCAAGAUGGGA ACCAUC       G
GGCCGAGGCGCACCGAGGA       U    A^ -             C      GCGAACC 
120       110       100        90         80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
- +
Br Gi Gu He Ki La Li Mo Mu Sk
Mature sequence

Pma-Mir-140-o2_5p
mirBase accessionNone
Sequence 
0- CAGUGGUUUUACCCUAUGGUAG -22
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Star sequence

Pma-Mir-140-o2_3p*
mirBase accessionNone
Sequence 
40- ACCACAGGGUAGAACCACGGAC -62
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