| MirGeneDB ID | Lch-Mir-140-P2 |
|---|---|
| Family name | MIR-140 (all species) |
| Species | Coelacanth (Latimeria chalumnae) |
| MiRBase ID | |
| Paralogues | Lch-Mir-140-P4 |
| Orthologues | Aca-Mir-140-P2-v1 Ami-Mir-140-P2-v1 Bta-Mir-140-P2-v1 Cfa-Mir-140-P2-v1 Cja-Mir-140-P2-v1 Cli-Mir-140-P2-v1 Cmi-Mir-140-P2-v1 Cpi-Mir-140-P2-v1 Cpo-Mir-140-P2-v1 Dno-Mir-140-P2-v1 Dre-Mir-140-P2-v1 Eca-Mir-140-P2-v1 Ete-Mir-140-P2-v1 Gga-Mir-140-P2-v1 Gja-Mir-140-P2-v1 Gmo-Mir-140-P2-v1 Hsa-Mir-140-P2-v1 Loc-Mir-140-P2-v1 Mal-Mir-140-P2-v1 Mdo-Mir-140-P2-v1 Mml-Mir-140-P2-v1 Mmr-Mir-140-P2-v1 Mmu-Mir-140-P2-v1 Mun-Mir-140-P2-v1 Neu-Mir-140-P2-v1 Oan-Mir-140-P2-v1 Ocu-Mir-140-P2-v1 Pab-Mir-140-P2-v1 Pma-Mir-140-o2 Rno-Mir-140-P2-v1 Sha-Mir-140-P2-v1 Spt-Mir-140-P2 Sto-Mir-140-P2-v1 Tgu-Mir-140-P2-v1 Tni-Mir-140-P2-v1 Xla-Mir-140-P2a-v1 Xla-Mir-140-P2b-v1 Xtr-Mir-140-P2-v1 |
| Node of Origin (locus) | Gnathostomata |
| Node of Origin (family) | Vertebrata |
| Genome context (LatCha1_add) |
JH127961.1: 491090-491151 [+] Ensembl |
| Seed | CCACAGG |
| Precursor (pre-Mir +30nt flank) |
CUUCCCUGUGUGUGUUUCCCUGUGUCUAGCCAGUGGUUUUACCCUAUGGUAGGUUACGUCAUGCUGUUCUACCACAGGGUAGAACCACGGACCGGAUACCAGGGGUUCUCUCUCCGCAUCUGGet precursor sequence |
| Structure | 10 20 30 40 50 60 CUUCCCUGUGUGUGUUU- - AG-| A A GUUACGU CCCU GUGUCU CC GUGGUUUUACCCU UGGUAG C GGGA CAUAGG GG CACCAAGAUGGGA ACCAUC A GUCUACGCCUCUCUCUUG C CCA^ - C UUGUCGU 120 110 100 90 80 70 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | No |
| Star sequence | Lch-Mir-140-P2_5p* (predicted) |
| mirBase accession | None |
| Sequence |
0- CAGUGGUUUUACCCUAUGGUAG -22
Get sequence
|
| Mature sequence | Lch-Mir-140-P2_3p (predicted) |
| mirBase accession | None |
| Sequence |
40- ACCACAGGGUAGAACCACGGAC -62
Get sequence
|
