MirGeneDB 3.0
42 microRNA genes with seed CCACAGG
Sort by genome coordinates Motifs
MirGeneDB ID ▲ MiRBase ID Family Seed 5p accession 3p accession Chromosome Start End Strand Node of origin (locus) Node of origin (family) Iso­miR 3' NTU  UG  UGUG CNNC
Pma-Mir-140-o3 None MIR-140 CCACAGG None None PIZI01000964.1 4177 4240 + P. marinus Vertebrata No 1
Laf-Mir-140-P1 V None MIR-140 CCACAGG None None GL010075.1 11188766 11188827 + Gnathostomata Vertebrata 2 No 1
Lch-Mir-140-P2 None MIR-140 CCACAGG None None JH127961.1 491090 491151 + Gnathostomata Vertebrata Unknown
Spt-Mir-140-P2 None MIR-140 CCACAGG None None QEPC01000412.1 2298530 2298591 - Gnathostomata Vertebrata Unknown 1
Aca-Mir-140-P2 V aca-mir-140 MIR-140 CCACAGG MIMAT0021765 MIMAT0021766 GL343643.1 205834 205895 + Gnathostomata Vertebrata 2 No 1
Ami-Mir-140-P2 V ami-mir-140 MIR-140 CCACAGG MIMAT0038160 MIMAT0038161 NW_017709930.1 237938 237999 + Gnathostomata Vertebrata 2 No
Bta-Mir-140-P2 V bta-mir-140 MIR-140 CCACAGG None MIMAT0003789 NC_037345.1 36962029 36962090 + Gnathostomata Vertebrata 2 No 1
Cfa-Mir-140-P2 V cfa-mir-140 MIR-140 CCACAGG None MIMAT0006689 chr5 79814255 79814316 - Gnathostomata Vertebrata 2 No 1
Cja-Mir-140-P2 V None MIR-140 CCACAGG None None CM021934.1 24155069 24155130 + Gnathostomata Vertebrata 2 No 1
Cli-Mir-140-P2 V cli-mir-140 MIR-140 CCACAGG MIMAT0038527 MIMAT0038528 scaffold123 5480472 5480533 - Gnathostomata Vertebrata 2 No 1
Cmi-Mir-140-P2 V None MIR-140 CCACAGG None None KI635866.1 3585272 3585333 - Gnathostomata Vertebrata 2 No 1
Cpi-Mir-140-P2 V cpi-mir-140 MIR-140 CCACAGG MIMAT0037764 MIMAT0037765 JH584945 517644 517705 - Gnathostomata Vertebrata 2 No 1
Cpo-Mir-140-P2 V cpo-mir-140 MIR-140 CCACAGG MIMAT0047004 MIMAT0047005 scaffold_22 6810958 6811019 - Gnathostomata Vertebrata 2 No 1
Dno-Mir-140-P2 V dno-mir-140 MIR-140 CCACAGG MIMAT0047653 MIMAT0047654 JH569970 120638 120699 - Gnathostomata Vertebrata 2 No 1
Dre-Mir-140-P2 V dre-mir-140 MIR-140 CCACAGG MIMAT0001836 MIMAT0003159 chr25 34791384 34791445 + Gnathostomata Vertebrata 2 No 1
Eca-Mir-140-P2 V eca-mir-140 MIR-140 CCACAGG MIMAT0012926 MIMAT0012927 CM009150.1 20601710 20601771 + Gnathostomata Vertebrata 2 No 1
Ete-Mir-140-P2 V None MIR-140 CCACAGG None None JH980312 15985822 15985883 - Gnathostomata Vertebrata 2 No 1
Gga-Mir-140-P2 V gga-mir-140 MIR-140 CCACAGG MIMAT0001159 MIMAT0003722 11 19068678 19068739 + Gnathostomata Vertebrata 2 No 1
Gja-Mir-140-P2 V None MIR-140 CCACAGG None None NW_015163100.1 1368704 1368765 + Gnathostomata Vertebrata 2 No 1 1
Gmo-Mir-140-P2 V gmo-mir-140 MIR-140 CCACAGG MIMAT0044299 MIMAT0044300 GeneScaffold_497 168347 168408 - Gnathostomata Vertebrata 2 No 1 1
Hsa-Mir-140-P2 V hsa-mir-140 MIR-140 CCACAGG MIMAT0000431 MIMAT0004597 chr16 69933103 69933164 + Gnathostomata Vertebrata 2 No 1
Loc-Mir-140-P2 V None MIR-140 CCACAGG None None LG23 5630089 5630150 - Gnathostomata Vertebrata 2 No
Mal-Mir-140-P2 V None MIR-140 CCACAGG None None KV885061.1 918110 918171 - Gnathostomata Vertebrata 2 No 1 1
Mdo-Mir-140-P2 V mdo-mir-140 MIR-140 CCACAGG MIMAT0012745 MIMAT0026937 1 699870962 699871023 + Gnathostomata Vertebrata 2 No
Mml-Mir-140-P2 V mml-mir-140 MIR-140 CCACAGG MIMAT0006197 MIMAT0006198 CM014355.1 57194599 57194660 + Gnathostomata Vertebrata 2 No 1
Mmr-Mir-140-P2 V mmr-mir-140 MIR-140 CCACAGG None MIMAT0049203 CM007680.1 42376401 42376462 + Gnathostomata Vertebrata 2 No 1
Mmu-Mir-140-P2 V mmu-mir-140 MIR-140 CCACAGG MIMAT0000151 MIMAT0000152 chr8 107551249 107551310 + Gnathostomata Vertebrata 2 No 1
Mun-Mir-140-P2 V None MIR-140 CCACAGG None None LR594636.1 360792693 360792754 + Gnathostomata Vertebrata 2 No
Neu-Mir-140-P2 V None MIR-140 CCACAGG None None CM051813.1 709339252 709339313 + Gnathostomata Vertebrata 2 No
Oan-Mir-140-P2 V oan-mir-140 MIR-140 CCACAGG MIMAT0006812 MIMAT0006813 NC_041738.1 39776980 39777041 - Gnathostomata Vertebrata 2 No
Ocu-Mir-140-P2 V ocu-mir-140 MIR-140 CCACAGG MIMAT0048241 MIMAT0048242 chr5 25337165 25337226 + Gnathostomata Vertebrata 2 No 1
Pab-Mir-140-P2 V None MIR-140 CCACAGG None None CM054697.2 69430690 69430751 + Gnathostomata Vertebrata 2 No 1
Rno-Mir-140-P2 V rno-mir-140 MIR-140 CCACAGG MIMAT0000573 MIMAT0000574 chr19 39608972 39609033 + Gnathostomata Vertebrata 2 No 1
Sha-Mir-140-P2 V sha-mir-140 MIR-140 CCACAGG None MIMAT0022778 GL834769.1 1909560 1909621 + Gnathostomata Vertebrata 2 No
Sto-Mir-140-P2 V None MIR-140 CCACAGG None None BFAA01000092.1 252505 252566 + Gnathostomata Vertebrata 2 No
Tgu-Mir-140-P2 V tgu-mir-140 MIR-140 CCACAGG MIMAT0014557 MIMAT0014642 11 11586546 11586607 + Gnathostomata Vertebrata 2 No 1
Tni-Mir-140-P2 V tni-mir-140 MIR-140 CCACAGG MIMAT0003025 None 13 1172500 1172561 + Gnathostomata Vertebrata 2 No 1 1
Xtr-Mir-140-P2 V xtr-mir-140 MIR-140 CCACAGG MIMAT0003601 None chr4 62459953 62460014 + Gnathostomata Vertebrata 2 No 1
Xla-Mir-140-P2a V xla-mir-140-1 MIR-140 CCACAGG MIMAT0046452 MIMAT0046453 NC_030730.1 49672494 49672555 - X. laevis Vertebrata 2 No 1
Xla-Mir-140-P2b V xla-mir-140-2 MIR-140 CCACAGG MIMAT0046452 MIMAT0046453 NC_030731.1 41460369 41460430 - X. laevis Vertebrata 2 No 1
Ebu-Mir-140-P3 V None MIR-140 AGUGGUU None None FYBX02009326.1 825017 825077 - E. burgeri Vertebrata 2 No 1 1
Ebu-Mir-140-P4 V None MIR-140 CCACAGG None None FYBX02008842.1 1778408 1778469 - E. burgeri Vertebrata 2 No 1

(red - mature/co-mature, blue - star)

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