MirGeneDB 2.1

MirGeneDB ID

Ebu-Mir-140-P3-v1

Family name MIR-140 (all species)
Seed AGUGGUU
Species Inshore hagfish (Eptatretus burgeri)
MiRBase ID
Paralogues Ebu-Mir-140-P3-v2  Ebu-Mir-140-P4-v1  Ebu-Mir-140-P4-v2 
Orthologues Pma-Mir-140-o3 
Node of Origin (locus) E. burgeri
Node of Origin (family) Vertebrata
Genome context
(Eburgeri_3)
FYBX02009326.1: 825017-825077 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GAAUCUUGAGUCGCACUGUGUGGCGCCUUCCAGUGGUUUUUCCCUAUGGUAGGUUGGAUUUGCUUGUCUACCACAGGGUAGAACCACGGACGGGAGCUGUGCAAGGCCCUCUGCAAAAGGA
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Structure
        10          20         30        40        50          
GAAUCUUGAGUCGCACU-- UG    G   -|  A        U    A      GUUGGAU 
                   G  UGGC CCU UCC GUGGUUUU CCCU UGGUAG       \
                   C  GUCG GGG AGG CACCAAGA GGGA ACCAUC       U
AGGAAAACGUCUCCCGGAA GU    A   C^  -        U    C      UGUUCGU 
 .       110       100        90         80        70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
To
Mature sequence

Ebu-Mir-140-P3-v1_5p

mirBase accessionNone
Sequence
0- CAGUGGUUUUUCCCUAUGGUAG -22
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Co-mature sequence

Ebu-Mir-140-P3-v1_3p

mirBase accessionNone
Sequence
39- ACCACAGGGUAGAACCACGGAC -61
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