MirGeneDB 3.0
MirGeneDB ID

Ami-Mir-140-P2

Family name MIR-140 (all species)
Species American alligator (Alligator mississippiensis)
MiRBase ID ami-mir-140
Paralogues
Orthologues Aca-Mir-140-P2-v1  Bta-Mir-140-P2-v1  Cfa-Mir-140-P2-v1  Cja-Mir-140-P2-v1  Cli-Mir-140-P2-v1  Cmi-Mir-140-P2-v1  Cpi-Mir-140-P2-v1  Cpo-Mir-140-P2-v1  Dno-Mir-140-P2-v1  Dre-Mir-140-P2-v1  Eca-Mir-140-P2-v1  Ete-Mir-140-P2-v1  Gga-Mir-140-P2-v1  Gja-Mir-140-P2-v1  Gmo-Mir-140-P2-v1  Hsa-Mir-140-P2-v1  Lch-Mir-140-P2  Loc-Mir-140-P2-v1  Mal-Mir-140-P2-v1  Mdo-Mir-140-P2-v1  Mml-Mir-140-P2-v1  Mmr-Mir-140-P2-v1  Mmu-Mir-140-P2-v1  Mun-Mir-140-P2-v1  Neu-Mir-140-P2-v1  Oan-Mir-140-P2-v1  Ocu-Mir-140-P2-v1  Pab-Mir-140-P2-v1  Pma-Mir-140-o2  Rno-Mir-140-P2-v1  Sha-Mir-140-P2-v1  Spt-Mir-140-P2  Sto-Mir-140-P2-v1  Tgu-Mir-140-P2-v1  Tni-Mir-140-P2-v1  Xla-Mir-140-P2a-v1  Xla-Mir-140-P2b-v1  Xtr-Mir-140-P2-v1 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCF_000281125.3_ASM28112v4_AMI_add)		 NW_017709930.1: 237938-237999 [+] UCSC
Clustered miRNAs
(< 50kb from Mir-140-P2-v1)		 Mir-140-P2-v1 NW_017709930.1: 237938-237999 [+] UCSC
Mir-140-P2-v2 NW_017709930.1: 237938-237999 [+] UCSC
Variant

Ami-Mir-140-P2-v1
Seed CCACAGG
Precursor
(pre-Mir +30nt flank)		 
GUGGGCUUCUGCUCUCUCUCUGUGUCCUGCCAGUGGUUUUACCCUAUGGUAGGUUACGUCAUGCUGUUCUACCACAGGGUAGAACCACGGACGGGAUACCGGGGCGCGCGCUGCGUCGGAGG
Get precursor sequence
Structure
        10          20         30        40        50        60
GUGGGCUUCUGCUCUCU--   U        -| A             A      GUUACGU 
                   CUC GUGUCCUG CC GUGGUUUUACCCU UGGUAG       C
                   GGG CAUAGGGC GG CACCAAGAUGGGA ACCAUC       A
GGAGGCUGCGUCGCGCGCG   C        A^ -             C      UUGUCGU 
120       110       100        90         80        70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
- +
To
Star sequence

Ami-Mir-140-P2-v1_5p*
mirBase accessionMIMAT0038160
Sequence 
0- CAGUGGUUUUACCCUAUGGUAG -22
Get sequence
Mature sequence

Ami-Mir-140-P2-v1_3p
mirBase accessionMIMAT0038161
Sequence 
40- ACCACAGGGUAGAACCACGGAC -62
Get sequence
Variant

Ami-Mir-140-P2-v2
Seed ACCACAG
Precursor
(pre-Mir +30nt flank)		 
GUGGGCUUCUGCUCUCUCUCUGUGUCCUGCCAGUGGUUUUACCCUAUGGUAGGUUACGUCAUGCUGUUCUACCACAGGGUAGAACCACGGACGGGAUACCGGGGCGCGCGCUGCGUCGGAGG
Get precursor sequence
Structure
        10          20         30        40        50        60
GUGGGCUUCUGCUCUCU--   U        -| A             A       UUACGU 
                   CUC GUGUCCUG CC GUGGUUUUACCCU UGGUAGG      C
                   GGG CAUAGGGC GG CACCAAGAUGGGA ACCAUCU      A
GGAGGCUGCGUCGCGCGCG   C        A^ -             C       UGUCGU 
120       110       100        90         80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsNo
Tissue expression
- +
To
Star sequence

Ami-Mir-140-P2-v2_5p*
mirBase accessionMIMAT0038160
Sequence 
0- CAGUGGUUUUACCCUAUGGUAGG -23
Get sequence
Mature sequence

Ami-Mir-140-P2-v2_3p
mirBase accessionMIMAT0038161
Sequence 
39- UACCACAGGGUAGAACCACGGAC -62
Get sequence