MirGeneDB 2.1

MirGeneDB ID

Pma-Mir-140-o1

Family name MIR-140 (all species)
Seed AGUGGUU
Species Sea Lamprey (Petromyzon marinus)
MiRBase ID pma-mir-140
Paralogues Pma-Mir-140-o2  Pma-Mir-140-o3 
Orthologues Aca-Mir-140-P1-v1  Aca-Mir-140-P1-v2  Ami-Mir-140-P1-v1  Ami-Mir-140-P1-v2  Bta-Mir-140-P1-v1  Bta-Mir-140-P1-v2  Cfa-Mir-140-P1-v1  Cfa-Mir-140-P1-v2  Cli-Mir-140-P1-v1  Cli-Mir-140-P1-v2  Cmi-Mir-140-P1-v1  Cmi-Mir-140-P1-v2  Cpi-Mir-140-P1-v1  Cpi-Mir-140-P1-v2  Cpo-Mir-140-P1-v1  Cpo-Mir-140-P1-v2  Dno-Mir-140-P1-v1  Dno-Mir-140-P1-v2  Dre-Mir-140-P1-v1  Dre-Mir-140-P1-v2  Ete-Mir-140-P1-v1  Ete-Mir-140-P1-v2  Gga-Mir-140-P1-v1  Gga-Mir-140-P1-v2  Gja-Mir-140-P1-v1  Gja-Mir-140-P1-v2  Gmo-Mir-140-P1-v1  Gmo-Mir-140-P1-v2  Hsa-Mir-140-P1-v1  Hsa-Mir-140-P1-v2  Lch-Mir-140-P1  Loc-Mir-140-P1-v1  Loc-Mir-140-P1-v2  Mal-Mir-140-P1-v1  Mal-Mir-140-P1-v2  Mdo-Mir-140-P1-v1  Mdo-Mir-140-P1-v2  Mml-Mir-140-P1-v1  Mml-Mir-140-P1-v2  Mmu-Mir-140-P1-v1  Mmu-Mir-140-P1-v2  Mun-Mir-140-P1-v1  Mun-Mir-140-P1-v2  Oan-Mir-140-P1-v1  Oan-Mir-140-P1-v2  Ocu-Mir-140-P1-v1  Ocu-Mir-140-P1-v2  Rno-Mir-140-P1-v1  Rno-Mir-140-P1-v2  Sha-Mir-140-P1-v1  Sha-Mir-140-P1-v2  Spt-Mir-140-P1  Sto-Mir-140-P1-v1  Sto-Mir-140-P1-v2  Tgu-Mir-140-P1-v1  Tgu-Mir-140-P1-v2  Tni-Mir-140-P1-v1  Tni-Mir-140-P1-v2  Xla-Mir-140-P1a-v1  Xla-Mir-140-P1a-v2  Xla-Mir-140-P1b-v1  Xla-Mir-140-P1b-v2  Xtr-Mir-140-P1-v1  Xtr-Mir-140-P1-v2 
Node of Origin (locus) P. marinus
Node of Origin (family) Vertebrata
Genome context
(GCF_010993605.1_kPetMar1.pri_genomic)
NC_046131.1: 1629117-1629178 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UACAACGACAACCCCCCCGUCUCGACCGCUCAGUGGUUUUACCCUAUGGUAGCUUUGAAUGGCAGACUCUACCACAGGGUAGAACCACGGACCGGUGACGGGGGGGGUGGUGGGACGCUGCG
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Structure
        10             20        30        40        50        60
UACAACGACAACCCCCC-----|   UCG    C  A             A      CUUUGAA 
                      CGUC   ACCG UC GUGGUUUUACCCU UGGUAG       U
                      GCAG   UGGC AG CACCAAGAUGGGA ACCAUC       G
GCGUCGCAGGGUGGUGGGGGGG^   ---    C  G             C      UCAGACG 
120       110       100           90        80        70
Deep sequencing
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CommentThere are three snps between the assembled genome and the miRBase entry.
3' NTU No
MotifsNo
Tissue expression
 +
Br Gi Gu He Ki La Li Mo Mu Sk
Mature sequence

Pma-Mir-140-o1_5p

mirBase accessionMIMAT0019471
Sequence
0- CAGUGGUUUUACCCUAUGGUAG -22
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Star sequence

Pma-Mir-140-o1_3p*

mirBase accessionNone
Sequence
40- ACCACAGGGUAGAACCACGGAC -62
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