MirGeneDB

MirGeneDB ID

Rno-Mir-133-P3-v2

Family name MIR-133 (all species)
Seed UGGUCCC
Species Norway rat (Rattus norvegicus)
MiRBase ID rno-mir-133b
Paralogues Rno-Mir-133-P1-v1  Rno-Mir-133-P1-v2  Rno-Mir-133-P2-v1  Rno-Mir-133-P2-v2  Rno-Mir-133-P3-v1 
Orthologues Aae-Mir-133  Aca-Mir-133-P3-v1  Aca-Mir-133-P3-v2  Ami-Mir-133-P3-v1  Ami-Mir-133-P3-v2  Asu-Mir-133  Bge-Mir-133  Bta-Mir-133-P3-v1  Bta-Mir-133-P3-v2  Cbr-Mir-133  Cel-Mir-133  Cfa-Mir-133-P3-v1  Cfa-Mir-133-P3-v2  Cin-Mir-133  Cli-Mir-133-P3-v1  Cli-Mir-133-P3-v2  Cpi-Mir-133-P3-v1  Cpi-Mir-133-P3-v2  Cpo-Mir-133-P3-v1  Cpo-Mir-133-P3-v2  Cte-Mir-133  Dan-Mir-133  Dme-Mir-133  Dmo-Mir-133  Dno-Mir-133-P3-v1  Dno-Mir-133-P3-v2  Dpu-Mir-133  Dre-Mir-133-P3a-v1  Dre-Mir-133-P3a-v2  Dre-Mir-133-P3b-v1  Dre-Mir-133-P3b-v2  Efe-Mir-133  Ete-Mir-133-P3-v1  Ete-Mir-133-P3-v2  Gga-Mir-133-P3-v1  Gga-Mir-133-P3-v2  Hme-Mir-133  Hsa-Mir-133-P3-v1  Hsa-Mir-133-P3-v2  Isc-Mir-133  Lan-Mir-133  Lgi-Mir-133  Mdo-Mir-133-P3-v1  Mdo-Mir-133-P3-v2  Mml-Mir-133-P3-v1  Mml-Mir-133-P3-v2  Mmu-Mir-133-P3-v1  Mmu-Mir-133-P3-v2  Oan-Mir-133-P3-v1  Oan-Mir-133-P3-v2  Ocu-Mir-133-P3-v1  Ocu-Mir-133-P3-v2  Sha-Mir-133-P3-v1  Sha-Mir-133-P3-v2  Spu-Mir-133  Tca-Mir-133  Tgu-Mir-133-P3-v1  Tgu-Mir-133-P3-v2  Xtr-Mir-133-P3-v1  Xtr-Mir-133-P3-v2 
Node of Origin (locus) Vertebrata
Node of Origin (family) Bilateria
Genome context
(rn6)
chr9: 26795659-26795717 [+] UCSC Ensembl
Clustered MiRNAs
(< 10kb from Mir-133-P3-v2)
Mir-1-P3 chr9: 26791776-26791835 [+] UCSC Ensembl
Mir-133-P3-v1 chr9: 26795659-26795717 [+] UCSC Ensembl
Mir-133-P3-v2 chr9: 26795659-26795717 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CACUUCCCAAGGGAGCGGCCCCCUGCUCUGGCUGGUCAAACGGAACCAAGUCCGUCUUCCUGAGAGGUUUGGUCCCCUUCAACCAGCUACAGCAGGGCUGGCAAAGCCCAAUCUUUGGA
Get precursor sequence
Structure
        10        20          30        40        50         
CACUUCCCAAGGGAGCGG  --|      C        CA  C  A       CCGUCUU 
                  CC  CCCUGCU UGGCUGGU  AA GG ACCAAGU       \
                  GG  GGGACGA AUCGACCA  UU CC UGGUUUG       C
AGGUUUCUAACCCGAAAC  UC^      C        AC  C  C       GAGAGUC 
       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsNo
Tissue expression
 +
Br Fa He Ki La Li Li Lu Mu Pa Sk Sm Sp St Te Th
Star sequence

Rno-Mir-133-P3-v2_5p*

MirBase accessionMIMAT0017205
Sequence
0- GCUGGUCAAACGGAACCAAGU -21
Get sequence
Validated targets TargetScanVert: rno-miR-133b-5p
miRDB: MIMAT0017205
Mature sequence

Rno-Mir-133-P3-v2_3p

MirBase accessionMIMAT0003126
Sequence
38- UUGGUCCCCUUCAACCAGCUA -59
Get sequence
Validated targets microrna.org: MIMAT0003126
TargetScanVert: rno-miR-133b-3p
miRDB: MIMAT0003126