Mir-101-P1-v2

MirGeneDB ID

Rno-Mir-101-P1

Family name

MIR-101 (all species)

Species

Norway rat (Rattus norvegicus)

MiRBase ID

rno-mir-101a

Paralogues

Rno-Mir-101-P1-v1 Rno-Mir-101-P2-v1

Orthologues

Aca-Mir-101-P1-v1 Ami-Mir-101-P1-v1 Bta-Mir-101-P1-v1 Cfa-Mir-101-P1-v1 Cja-Mir-101-P1-v1 Cli-Mir-101-P1-v1 Cmi-Mir-101-P1-v1 Cpi-Mir-101-P1-v1 Cpo-Mir-101-P1-v1 Dno-Mir-101-P1-v1 Dre-Mir-101-P1-v1 Eca-Mir-101-P1-v1 Ete-Mir-101-P1-v1 Gga-Mir-101-P1-v1 Gja-Mir-101-P1-v1 Gmo-Mir-101-P1-v1 Hsa-Mir-101-P1-v1 Laf-Mir-101-P1-v1 Lch-Mir-101-P1 Loc-Mir-101-P1-v1 Mal-Mir-101-P1-v1 Mdo-Mir-101-P1-v1 Mml-Mir-101-P1-v1 Mmr-Mir-101-P1-v1 Mmu-Mir-101-P1-v1 Mun-Mir-101-P1-v1 Oan-Mir-101-P1-v1 Ocu-Mir-101-P1-v1 Pab-Mir-101-P1-v1 Pbv-Mir-101-P1-v1 Sha-Mir-101-P1-v1 Spt-Mir-101-P1c Spt-Mir-101-P1d Sto-Mir-101-P1-v1 Tgu-Mir-101-P1-v1 Tni-Mir-101-P1-v1 Xla-Mir-101-P1a-v1 Xla-Mir-101-P1b-v1 Xtr-Mir-101-P1-v1

Node of Origin (locus)

Vertebrata

Node of Origin (family)

Vertebrata

Genome context
(rn6)

chr5: 120168445-120168501 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-101-P1-v2)

Mir-101-P1-v1 chr5: 120168444-120168502 [-] UCSC Ensembl
Mir-101-P1-v2 chr5: 120168445-120168501 [-] UCSC Ensembl

Variant

Rno-Mir-101-P1-v2

Seed

UACAGUA

Precursor
(pre-Mir +30nt flank)

AGACGUGGUGACUGACAGGCUGCCCUGGCUCAGUUAUCACAGUGCUGAUGCUGUCCAUUCUAAAGGUACAGUACUGUGAUAACUGAAGGAUGGCAGCCAUCUUGCCUUCCUCCCAAG

Get precursor sequence

Structure

        10          20        30        40        50        
AGACGUGGUGACUGACA--|      CUGGC                  A    GUCCA 
                   GGCUGCC     UCAGUUAUCACAGUGCUG UGCU     U
                   CCGACGG     AGUCAAUAGUGUCAUGAC AUGG     U
GAACCCUCCUUCCGUUCUA^      UAGGA                  -    AAAUC 
     110       100        90        80        70         60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

Tissue expression

Dr	Dr	Ad	Bi	Bi	Bi	Bi	Br	Br	Br	Br	Ce	Ce	Ce	Ce	Co	Co	Co	Co	Du	Du	Du	Du	Fa	He	He	He	Hi	Hi	Il	Il	Je	Je	Ki	Ki	Ki	Ki	Ki	La	Li	Li	Li	Li	Li	Li	Lu	Me	Me	Mu	Ov	Pa	Pa	Pa	Sk	Sm	So	So	So	So	Sp	St	St	St	St	Te	Te	Th	Ut	Wh

Star sequence

Rno-Mir-101-P1-v2_5p*

mirBase accession

MIMAT0004726

Sequence

0- CAGUUAUCACAGUGCUGAUGCU -22

Get sequence

Proposed targets

microrna.org: MIMAT0004726
TargetScanVert: rno-miR-101a-5p
miRDB: MIMAT0004726

Mature sequence

Rno-Mir-101-P1-v2_3p

mirBase accession

MIMAT0000823

Sequence

35- GUACAGUACUGUGAUAACUGAA -57

Get sequence

Proposed targets

microrna.org: MIMAT0000823
TargetScanVert: rno-miR-101a-3p
miRDB: MIMAT0000823

Variant

Rno-Mir-101-P1-v1

Seed

ACAGUAC

Precursor
(pre-Mir +30nt flank)

CAGACGUGGUGACUGACAGGCUGCCCUGGCUCAGUUAUCACAGUGCUGAUGCUGUCCAUUCUAAAGGUACAGUACUGUGAUAACUGAAGGAUGGCAGCCAUCUUGCCUUCCUCCCAAGA

Get precursor sequence

Structure

        10          20        30        40        50         
CAGACGUGGUGACUGACA--|      CUGGC                  A   UGUCCA 
                    GGCUGCC     UCAGUUAUCACAGUGCUG UGC      U
                    CCGACGG     AGUCAAUAGUGUCAUGAC AUG      U
AGAACCCUCCUUCCGUUCUA^      UAGGA                  -   GAAAUC 
       110       100        90        80        70         60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

Dr	Dr	Ad	Bi	Bi	Bi	Bi	Br	Br	Br	Br	Ce	Ce	Ce	Ce	Co	Co	Co	Co	Du	Du	Du	Du	Fa	He	He	He	Hi	Hi	Il	Il	Je	Je	Ki	Ki	Ki	Ki	Ki	La	Li	Li	Li	Li	Li	Li	Lu	Me	Me	Mu	Ov	Pa	Pa	Pa	Sk	Sm	So	So	So	So	Sp	St	St	St	St	Te	Te	Th	Ut	Wh

Star sequence

Rno-Mir-101-P1-v1_5p*

mirBase accession

MIMAT0004726

Sequence

0- UCAGUUAUCACAGUGCUGAUGC -22

Get sequence

Proposed targets

microrna.org: MIMAT0004726
TargetScanVert: rno-miR-101a-5p
miRDB: MIMAT0004726

Mature sequence

Rno-Mir-101-P1-v1_3p

mirBase accession

MIMAT0000823

Sequence

37- UACAGUACUGUGAUAACUGAAG -59

Get sequence

Proposed targets

microrna.org: MIMAT0000823
TargetScanVert: rno-miR-101a-3p
miRDB: MIMAT0000823