Mir-101-P1-v1

MirGeneDB ID

Cmi-Mir-101-P1

Family name

MIR-101 (all species)

Species

Australian ghostshark (Callorhinchus milii)

MiRBase ID

Paralogues

Cmi-Mir-101-P2-v1

Orthologues

Aca-Mir-101-P1-v1 Ami-Mir-101-P1-v1 Bta-Mir-101-P1-v1 Cfa-Mir-101-P1-v1 Cja-Mir-101-P1-v1 Cli-Mir-101-P1-v1 Cpi-Mir-101-P1-v1 Cpo-Mir-101-P1-v1 Dno-Mir-101-P1-v1 Dre-Mir-101-P1-v1 Eca-Mir-101-P1-v1 Ete-Mir-101-P1-v1 Gga-Mir-101-P1-v1 Gja-Mir-101-P1-v1 Gmo-Mir-101-P1-v1 Hsa-Mir-101-P1-v1 Laf-Mir-101-P1-v1 Lch-Mir-101-P1 Loc-Mir-101-P1-v1 Mal-Mir-101-P1-v1 Mdo-Mir-101-P1-v1 Mml-Mir-101-P1-v1 Mmr-Mir-101-P1-v1 Mmu-Mir-101-P1-v1 Mun-Mir-101-P1-v1 Oan-Mir-101-P1-v1 Ocu-Mir-101-P1-v1 Pab-Mir-101-P1-v1 Pbv-Mir-101-P1-v1 Rno-Mir-101-P1-v1 Sha-Mir-101-P1-v1 Spt-Mir-101-P1c Spt-Mir-101-P1d Sto-Mir-101-P1-v1 Tgu-Mir-101-P1-v1 Tni-Mir-101-P1-v1 Xla-Mir-101-P1a-v1 Xla-Mir-101-P1b-v1 Xtr-Mir-101-P1-v1

Node of Origin (locus)

Vertebrata

Node of Origin (family)

Vertebrata

Genome context
(GCA_000165045.2_Callorhinchus_milii-6.1.3)

KI635887.1: 6427947-6428005 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-101-P1-v1)

Mir-101-P1-v1 KI635887.1: 6427947-6428005 [+] UCSC Ensembl
Mir-101-P1-v2 KI635887.1: 6427948-6428004 [+] UCSC Ensembl

Variant

Cmi-Mir-101-P1-v1

Seed

ACAGUAC

Precursor
(pre-Mir +30nt flank)

AUUCUCAUGGUGGUUGCUGGCUGCUGUGUCUCAGUUCUCACAGUGCUGAUGCUGUCCAUUGUAAAGGUACAGUACUGUGAUAACUGAAAGUCGGCAGUCGCCUGGGCUCCGCGGAGUGU

Get precursor sequence

Structure

        10          20        30        40        50         
AUUCUCAUGGUGGUUGCU--|       UGUC      C           A   UGUCCA 
                    GGCUGCUG    UCAGUU UCACAGUGCUG UGC      U
                    CUGACGGC    AGUCAA AGUGUCAUGAC AUG      U
UGUGAGGCGCCUCGGGUCCG^       UGAA      U           -   GAAAUG 
       110       100        90        80        70         60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

Bl	Br	Ey	Gi	He	In	Ki	Li	Mu	Ov	Pa	Re	Sk	Sp	Te	Ut

Star sequence

Cmi-Mir-101-P1-v1_5p*

mirBase accession

None

Sequence

0- UCAGUUCUCACAGUGCUGAUGC -22

Get sequence

Mature sequence

Cmi-Mir-101-P1-v1_3p

mirBase accession

None

Sequence

37- UACAGUACUGUGAUAACUGAAA -59

Get sequence

Variant

Cmi-Mir-101-P1-v2

Seed

UACAGUA

Precursor
(pre-Mir +30nt flank)

UUCUCAUGGUGGUUGCUGGCUGCUGUGUCUCAGUUCUCACAGUGCUGAUGCUGUCCAUUGUAAAGGUACAGUACUGUGAUAACUGAAAGUCGGCAGUCGCCUGGGCUCCGCGGAGUG

Get precursor sequence

Structure

        10          20        30        40        50        
UUCUCAUGGUGGUUGCU--|       UGUC      C           A    GUCCA 
                   GGCUGCUG    UCAGUU UCACAGUGCUG UGCU     U
                   CUGACGGC    AGUCAA AGUGUCAUGAC AUGG     U
GUGAGGCGCCUCGGGUCCG^       UGAA      U           -    AAAUG 
     110       100        90        80        70         60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14)

Tissue expression

Bl	Br	Ey	Gi	He	In	Ki	Li	Mu	Ov	Pa	Re	Sk	Sp	Te	Ut

Star sequence

Cmi-Mir-101-P1-v2_5p*

mirBase accession

None

Sequence

0- CAGUUCUCACAGUGCUGAUGCU -22

Get sequence

Mature sequence

Cmi-Mir-101-P1-v2_3p

mirBase accession

None

Sequence

35- GUACAGUACUGUGAUAACUGAA -57

Get sequence