| MirGeneDB ID | Spt-Mir-101-P1d |
|---|---|
| Family name | MIR-101 (all species) |
| Species | Tuatara (Sphenodon punctatus) |
| MiRBase ID | |
| Paralogues | Spt-Mir-101-P1c Spt-Mir-101-P2 |
| Orthologues | Aca-Mir-101-P1-v1 Ami-Mir-101-P1-v1 Bta-Mir-101-P1-v1 Cfa-Mir-101-P1-v1 Cja-Mir-101-P1-v1 Cli-Mir-101-P1-v1 Cmi-Mir-101-P1-v1 Cpi-Mir-101-P1-v1 Cpo-Mir-101-P1-v1 Dno-Mir-101-P1-v1 Dre-Mir-101-P1-v1 Eca-Mir-101-P1-v1 Ete-Mir-101-P1-v1 Gga-Mir-101-P1-v1 Gja-Mir-101-P1-v1 Gmo-Mir-101-P1-v1 Hsa-Mir-101-P1-v1 Laf-Mir-101-P1-v1 Lch-Mir-101-P1 Loc-Mir-101-P1-v1 Mal-Mir-101-P1-v1 Mdo-Mir-101-P1-v1 Mml-Mir-101-P1-v1 Mmr-Mir-101-P1-v1 Mmu-Mir-101-P1-v1 Mun-Mir-101-P1-v1 Oan-Mir-101-P1-v1 Ocu-Mir-101-P1-v1 Pab-Mir-101-P1-v1 Pbv-Mir-101-P1-v1 Rno-Mir-101-P1-v1 Sha-Mir-101-P1-v1 Sto-Mir-101-P1-v1 Tgu-Mir-101-P1-v1 Tni-Mir-101-P1-v1 Xtr-Mir-101-P1-v1 |
| Node of Origin (locus) | S. punctatus |
| Node of Origin (family) | Vertebrata |
| Genome context (GCA_003113815.1_ASM311381v1_TUATARA) |
QEPC01013865.1: 24500970-24501028 [-] UCSC Ensembl |
| Clustered miRNAs (< 50kb from Mir-101-P1d) |
Mir-101-P1d
QEPC01013865.1: 24500970-24501028 [-]
UCSC
Ensembl
Mir-101-P1c QEPC01013865.1: 24503586-24503644 [-] UCSC Ensembl |
| Seed | ACAGUAC |
| Precursor (pre-Mir +30nt flank) |
GGCAAGCAGUGACUGACAGGCUGCCCUGGCUCAGUUAUCACAGUGCUGAUGCUGUCUAUGCUAAAGGUACAGUACUGUGAUAACUGAAGGAUGGCAGCCAUCUUAGCUUCACAAGGACCGet precursor sequence |
| Structure | 10 20 30 40 50 GGCAAGCAGUGACUGACA--| CUGGC A UGUCUA GGCUGCC UCAGUUAUCACAGUGCUG UGC U CCGACGG AGUCAAUAGUGUCAUGAC AUG G CCAGGAACACUUCGAUUCUA^ UAGGA - GAAAUC 110 100 90 80 70 60 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | CNNC at 3p(+17), UGUG in loop |
| Star sequence | Spt-Mir-101-P1d_5p* (predicted) |
| mirBase accession | None |
| Sequence |
0- UCAGUUAUCACAGUGCUGAUGC -22
Get sequence
|
| Mature sequence | Spt-Mir-101-P1d_3p (predicted) |
| mirBase accession | None |
| Sequence |
37- UACAGUACUGUGAUAACUGAAG -59
Get sequence
|
