Mir-101-P1-v1

MirGeneDB ID

Ete-Mir-101-P1

Family name

MIR-101 (all species)

Species

Lesser hedgehog tenrec (Echinops telfairi)

MiRBase ID

Paralogues

Ete-Mir-101-P2-v1

Orthologues

Aca-Mir-101-P1-v1 Ami-Mir-101-P1-v1 Bta-Mir-101-P1-v1 Cfa-Mir-101-P1-v1 Cja-Mir-101-P1-v1 Cli-Mir-101-P1-v1 Cmi-Mir-101-P1-v1 Cpi-Mir-101-P1-v1 Cpo-Mir-101-P1-v1 Dno-Mir-101-P1-v1 Dre-Mir-101-P1-v1 Eca-Mir-101-P1-v1 Gga-Mir-101-P1-v1 Gja-Mir-101-P1-v1 Gmo-Mir-101-P1-v1 Hsa-Mir-101-P1-v1 Laf-Mir-101-P1-v1 Lch-Mir-101-P1 Loc-Mir-101-P1-v1 Mal-Mir-101-P1-v1 Mdo-Mir-101-P1-v1 Mml-Mir-101-P1-v1 Mmr-Mir-101-P1-v1 Mmu-Mir-101-P1-v1 Mun-Mir-101-P1-v1 Oan-Mir-101-P1-v1 Ocu-Mir-101-P1-v1 Pab-Mir-101-P1-v1 Pbv-Mir-101-P1-v1 Rno-Mir-101-P1-v1 Sha-Mir-101-P1-v1 Spt-Mir-101-P1c Spt-Mir-101-P1d Sto-Mir-101-P1-v1 Tgu-Mir-101-P1-v1 Tni-Mir-101-P1-v1 Xla-Mir-101-P1a-v1 Xla-Mir-101-P1b-v1 Xtr-Mir-101-P1-v1

Node of Origin (locus)

Vertebrata

Node of Origin (family)

Vertebrata

Genome context
(echTel2)

JH980298: 60204639-60204697 [+] UCSC

Clustered miRNAs
(< 50kb from Mir-101-P1-v1)

Mir-101-P1-v1 JH980298: 60204639-60204697 [+] UCSC
Mir-101-P1-v2 JH980298: 60204640-60204696 [+] UCSC

Variant

Ete-Mir-101-P1-v1

Seed

ACAGUAC

Precursor
(pre-Mir +30nt flank)

GCGACGGAGUGACUGACAGGCUGCCCUGGCUCAGUUAUCACAGUGCUGAUGCUGUCCAUUCUAAAGGUACAGUACUGUGAUAACUGAAGGAUGGCAGCCAUCUUGCCUUCCAUCAACGG

Get precursor sequence

Structure

        10          20        30        40        50         
GCGACGGAGUGACUGACA--|      CUGGC                  A   UGUCCA 
                    GGCUGCC     UCAGUUAUCACAGUGCUG UGC      U
                    CCGACGG     AGUCAAUAGUGUCAUGAC AUG      U
GGCAACUACCUUCCGUUCUA^      UAGGA                  -   GAAAUC 
       110       100        90        80        70         60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

To

Star sequence

Ete-Mir-101-P1-v1_5p*

mirBase accession

None

Sequence

0- UCAGUUAUCACAGUGCUGAUGC -22

Get sequence

Mature sequence

Ete-Mir-101-P1-v1_3p

mirBase accession

None

Sequence

37- UACAGUACUGUGAUAACUGAAG -59

Get sequence

Variant

Ete-Mir-101-P1-v2

Seed

UACAGUA

Precursor
(pre-Mir +30nt flank)

CGACGGAGUGACUGACAGGCUGCCCUGGCUCAGUUAUCACAGUGCUGAUGCUGUCCAUUCUAAAGGUACAGUACUGUGAUAACUGAAGGAUGGCAGCCAUCUUGCCUUCCAUCAACG

Get precursor sequence

Structure

        10          20        30        40        50        
CGACGGAGUGACUGACA--|      CUGGC                  A    GUCCA 
                   GGCUGCC     UCAGUUAUCACAGUGCUG UGCU     U
                   CCGACGG     AGUCAAUAGUGUCAUGAC AUGG     U
GCAACUACCUUCCGUUCUA^      UAGGA                  -    AAAUC 
     110       100        90        80        70         60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

Tissue expression

To

Star sequence

Ete-Mir-101-P1-v2_5p*

mirBase accession

None

Sequence

0- CAGUUAUCACAGUGCUGAUGCU -22

Get sequence

Mature sequence

Ete-Mir-101-P1-v2_3p

mirBase accession

None

Sequence

35- GUACAGUACUGUGAUAACUGAA -57

Get sequence