MirGeneDB 3.0
MirGeneDB ID

Cpi-Mir-101-P1

Family name MIR-101 (all species)
Species Western painted turtle (Chrysemys picta bellii)
MiRBase ID cpi-mir-101-1
Paralogues Cpi-Mir-101-P2-v1 
Orthologues Aca-Mir-101-P1-v1  Ami-Mir-101-P1-v1  Bta-Mir-101-P1-v1  Cfa-Mir-101-P1-v1  Cja-Mir-101-P1-v1  Cli-Mir-101-P1-v1  Cmi-Mir-101-P1-v1  Cpo-Mir-101-P1-v1  Dno-Mir-101-P1-v1  Dre-Mir-101-P1-v1  Eca-Mir-101-P1-v1  Ete-Mir-101-P1-v1  Gga-Mir-101-P1-v1  Gja-Mir-101-P1-v1  Gmo-Mir-101-P1-v1  Hsa-Mir-101-P1-v1  Laf-Mir-101-P1-v1  Lch-Mir-101-P1  Loc-Mir-101-P1-v1  Mal-Mir-101-P1-v1  Mdo-Mir-101-P1-v1  Mml-Mir-101-P1-v1  Mmr-Mir-101-P1-v1  Mmu-Mir-101-P1-v1  Mun-Mir-101-P1-v1  Oan-Mir-101-P1-v1  Ocu-Mir-101-P1-v1  Pab-Mir-101-P1-v1  Pbv-Mir-101-P1-v1  Rno-Mir-101-P1-v1  Sha-Mir-101-P1-v1  Spt-Mir-101-P1c  Spt-Mir-101-P1d  Sto-Mir-101-P1-v1  Tgu-Mir-101-P1-v1  Tni-Mir-101-P1-v1  Xla-Mir-101-P1a-v1  Xla-Mir-101-P1b-v1  Xtr-Mir-101-P1-v1 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(chrPic1)		 JH584706: 839802-839860 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-101-P1-v1)		 Mir-101-P1-v1 JH584706: 839802-839860 [-] UCSC Ensembl
Mir-101-P1-v2 JH584706: 839803-839859 [-] UCSC Ensembl
Variant

Cpi-Mir-101-P1-v1
Seed ACAGUAC
Precursor
(pre-Mir +30nt flank)		 
CAGACAUAAUGACUGACAGGCUGCCCUGGCUCAGUUAUCACAGUGCUGAUGCUGUCUAUUCUAAAGGUACAGUACUGUGAUAACUGAAGGAUGGCAGCCAUCUUAGCUUCACAAGAACC
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Structure
        10          20        30        40        50         
CAGACAUAAUGACUGACA--|      CUGGC                  A   UGUCUA 
                    GGCUGCC     UCAGUUAUCACAGUGCUG UGC      U
                    CCGACGG     AGUCAAUAGUGUCAUGAC AUG      U
CCAAGAACACUUCGAUUCUA^      UAGGA                  -   GAAAUC 
       110       100        90        80        70         60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
- +
Te Te Te To
Star sequence

Cpi-Mir-101-P1-v1_5p*
mirBase accessionMIMAT0037716
Sequence 
0- UCAGUUAUCACAGUGCUGAUGC -22
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Mature sequence

Cpi-Mir-101-P1-v1_3p
mirBase accessionMIMAT0037717
Sequence 
37- UACAGUACUGUGAUAACUGAAG -59
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Variant

Cpi-Mir-101-P1-v2
Seed UACAGUA
Precursor
(pre-Mir +30nt flank)		 
AGACAUAAUGACUGACAGGCUGCCCUGGCUCAGUUAUCACAGUGCUGAUGCUGUCUAUUCUAAAGGUACAGUACUGUGAUAACUGAAGGAUGGCAGCCAUCUUAGCUUCACAAGAAC
Get precursor sequence
Structure
        10          20        30        40        50        
AGACAUAAUGACUGACA--|      CUGGC                  A    GUCUA 
                   GGCUGCC     UCAGUUAUCACAGUGCUG UGCU     U
                   CCGACGG     AGUCAAUAGUGUCAUGAC AUGG     U
CAAGAACACUUCGAUUCUA^      UAGGA                  -    AAAUC 
     110       100        90        80        70         60
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
- +
Te Te Te To
Star sequence

Cpi-Mir-101-P1-v2_5p*
mirBase accessionMIMAT0037716
Sequence 
0- CAGUUAUCACAGUGCUGAUGCU -22
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Mature sequence

Cpi-Mir-101-P1-v2_3p
mirBase accessionMIMAT0037717
Sequence 
35- GUACAGUACUGUGAUAACUGAA -57
Get sequence