MirGeneDB 3.0
MirGeneDB ID

Pcr-Mir-10-P1o4

Family name MIR-10 (all species)
Species Tiger flatworm (Prostheceraeus crozieri )
MiRBase ID
Paralogues Pcr-Mir-10-P1o4-v1  Pcr-Mir-10-P1o5  Pcr-Mir-10-P3  Pcr-Mir-10-P4s1  Pcr-Mir-10-P4s2  Pcr-Mir-10-P4t 
Orthologues Aae-Mir-10-P1-v1  Adi-Mir-10  Aga-Mir-10-P1-v1  Agr-Mir-10-P1  Asp-Mir-10  Asu-Mir-10-P1  Bfl-Mir-10-P1-v1  Bge-Mir-10-P1-v1  Bla-Mir-10-P1-v1  Cbr-Mir-10-P1  Cel-Mir-10-P1  Cte-Mir-10-P1  Dan-Mir-10-P1  Dgr-Mir-10-P1  Dlo-Mir-10-P1-v1  Dma-Mir-10-P1-v1  Dme-Mir-10-P1  Dmo-Mir-10-P1  Dpu-Mir-10-P1-v1  Dsi-Mir-10-P1  Dya-Mir-10-P1  Eba-Mir-10-P1  Efe-Mir-10-P1  Egr-Mir-10-P1  Gpa-Mir-10-P1  Gsp-Mir-10-P1  Hme-Mir-10-P1-v1  Hru-Mir-10-P1  Isc-Mir-10-P1-v1  Lgi-Mir-10-P1  Lhy-Mir-10-P1  Llo-Mir-10-P1  Lpo-Mir-10-P1o-v1  Mgi-Mir-10-P1  Mom-Mir-10-P1  Npo-Mir-10-P1  Nve-Mir-10  Ofu-Mir-10-P1  Pau-Mir-10-P1  Pca-Mir-10-P1  Pdu-Mir-10-P1  Pfl-Mir-10-P1  Pmi-Mir-10-P1  Pve-Mir-10-P1  Rph-Mir-10-P1  Sko-Mir-10-P1  Sma-Mir-10-P1  Snu-Mir-10-P1  Spu-Mir-10-P1  Tca-Mir-10-P1-v1  War-Mir-10-P1  Xbo-Mir-10-P1 
Node of Origin (locus) P. crozeri
Node of Origin (family) Eumetazoa
Genome context
(GCA_907163375.1_PROCRO_GENOME_genomic)		 CAJQUW010012264.1: 63192-63250 [+] Ensembl
Clustered miRNAs
(< 50kb from Mir-10-P1o4-v2)		 Mir-10-P1o4-v1 CAJQUW010012264.1: 63191-63251 [+] Ensembl
Mir-10-P1o4-v2 CAJQUW010012264.1: 63192-63250 [+] Ensembl
Variant

Pcr-Mir-10-P1o4-v2
Seed CCCUGUA
Precursor
(pre-Mir +30nt flank)		 
AAAUCAUCUGUGUCUUAGCCGUGAUCUUUUACCCUGUAGGUCCGAUUUUGACUGCAUUGCGAUUUACAAAUUCGAAUCUACAGAGGUUUAAUGCGCCGGCUUUAUCUGCAAACUUCGUC
Get precursor sequence
Structure
        10          20         30         40        50        
AAAUCAUCUGUGUCUUA--   -|  AUC  UU   -        C   U    ACUGCAU 
                   GCC GUG   UU  ACC CUGUAGGU CGA UUUG       U
                   CGG CGC   AA  UGG GACAUCUA GCU AAAC       G
CUGCUUCAAACGUCUAUUU   C^  GU-  UU   A        A   U    AUUUAGC 
       110       100         90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
To
Mature sequence

Pcr-Mir-10-P1o4-v2_5p
mirBase accessionNone
Sequence 
0- ACCCUGUAGGUCCGAUUUUGA -21
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Star sequence

Pcr-Mir-10-P1o4-v2_3p*
mirBase accessionNone
Sequence 
37- AAAUUCGAAUCUACAGAGGUUU -59
Get sequence
Variant

Pcr-Mir-10-P1o4-v1
Seed ACCCUGU
Precursor
(pre-Mir +30nt flank)		 
GAAAUCAUCUGUGUCUUAGCCGUGAUCUUUUACCCUGUAGGUCCGAUUUUGACUGCAUUGCGAUUUACAAAUUCGAAUCUACAGAGGUUUAAUGCGCCGGCUUUAUCUGCAAACUUCGUCU
Get precursor sequence
Structure
        10          20         30         40        50         
GAAAUCAUCUGUGUCUU--    -|  AUC  UU   -        C   U    ACUGCAU 
                   AGCC GUG   UU  ACC CUGUAGGU CGA UUUG       U
                   UCGG CGC   AA  UGG GACAUCUA GCU AAAC       G
UCUGCUUCAAACGUCUAUU    C^  GU-  UU   A        A   U    AUUUAGC 
 .       110       100         90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
To
Mature sequence

Pcr-Mir-10-P1o4-v1_5p
mirBase accessionNone
Sequence 
0- UACCCUGUAGGUCCGAUUUUGA -22
Get sequence
Star sequence

Pcr-Mir-10-P1o4-v1_3p*
mirBase accessionNone
Sequence 
38- AAAUUCGAAUCUACAGAGGUUUA -61
Get sequence