Mir-199-P2-v2

MirGeneDB ID

Mml-Mir-199-P2-v2

Family name

MIR-199 (all species)

Seed

ACAGUAG

Species

Rhesus monkey (Macaca mulatta)

MiRBase ID

mml-mir-199a-2

Paralogues

Mml-Mir-199-P1-v1 Mml-Mir-199-P1-v2 Mml-Mir-199-P1-v3 Mml-Mir-199-P2-v1 Mml-Mir-199-P2-v3 Mml-Mir-199-P3-v1 Mml-Mir-199-P3-v2 Mml-Mir-199-P3-v3

Orthologues

Aca-Mir-199-P2-v1 Aca-Mir-199-P2-v2 Aca-Mir-199-P2-v3 Ami-Mir-199-P2-v1 Ami-Mir-199-P2-v2 Ami-Mir-199-P2-v3 Bta-Mir-199-P2-v1 Bta-Mir-199-P2-v2 Bta-Mir-199-P2-v3 Cfa-Mir-199-P2-v1 Cfa-Mir-199-P2-v2 Cfa-Mir-199-P2-v3 Cpi-Mir-199-P2-v1 Cpi-Mir-199-P2-v2 Cpi-Mir-199-P2-v3 Cpo-Mir-199-P2-v1 Cpo-Mir-199-P2-v2 Cpo-Mir-199-P2-v3 Dre-Mir-199-P2-v1 Dre-Mir-199-P2-v2 Dre-Mir-199-P2-v3 Ete-Mir-199-P2-v1 Ete-Mir-199-P2-v2 Ete-Mir-199-P2-v3 Hsa-Mir-199-P2-v1 Hsa-Mir-199-P2-v2 Hsa-Mir-199-P2-v3 Mdo-Mir-199-P2-v1 Mdo-Mir-199-P2-v2 Mdo-Mir-199-P2-v3 Mmu-Mir-199-P2-v1 Mmu-Mir-199-P2-v2 Mmu-Mir-199-P2-v3 Ocu-Mir-199-P2-v1 Ocu-Mir-199-P2-v2 Ocu-Mir-199-P2-v3 Sha-Mir-199-P2-v1 Sha-Mir-199-P2-v2 Sha-Mir-199-P2-v3 Xtr-Mir-199-P2

Node of Origin (locus)

Vertebrata

Node of Origin (family)

Vertebrata

Genome context
(rheMac8)

chr19: 10858567-10858629 [-] UCSC Ensembl

Clustered MiRNAs
(< 10kb from Mir-199-P2-v2)

Mir-199-P2-v1 chr19: 10858567-10858629 [-] UCSC Ensembl
Mir-199-P2-v2 chr19: 10858567-10858629 [-] UCSC Ensembl
Mir-199-P2-v3 chr19: 10858567-10858629 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UGCUGCGGGAUGGACAGCCGGCCUCGCCAACCCAGUGUUCAGACUACCUGUUCAGGAGGCUCUCAACGUGUACAGUAGUCUGCACAUUGGUUAGGCUGGGCUUGGGUGAGCGGCGCGUCGAGA

Get precursor sequence

Structure

        10          20        30        40        50        60 
UGCUGCGGGAUGGACAG-  -|    C   AAC       U        C   U  GGAGGC 
                  CC GGCCU GCC   CCAGUGU CAGACUAC UGU CA      U
                  GG UCGGG CGG   GGUUACA GUCUGAUG ACA GU      C
AGAGCUGCGCGGCGAGUG  U^    U   AUU       C        -   U  GCAACU 
 120       110       100        90        80         70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Bo	Br	Br	Br	He	Ki	Li	Lu	Ly	Sk	Sp	Te	Th

Star sequence

Mml-Mir-199-P2-v2_5p*

MirBase accession

MIMAT0006231

Sequence

0- CCCAGUGUUCAGACUACCUGUUCA -24

Get sequence

Validated targets

TargetScanVert: mml-miR-199a-5p

Mature sequence

Mml-Mir-199-P2-v2_3p

MirBase accession

MIMAT0006232

Sequence

40- UACAGUAGUCUGCACAUUGGUUA -63

Get sequence

Validated targets

TargetScanVert: mml-miR-199a-3p