MirGeneDB 3.0
MirGeneDB ID

Lpo-Mir-305-P4

Family name MIR-305 (all species)
Species Atlantic horseshoe crab (Limulus polyphemus)
MiRBase ID
Paralogues Lpo-Mir-305-P5  Lpo-Mir-305-P6  Lpo-Mir-305-P7  Lpo-Mir-305-P8 
Orthologues Aae-Mir-305  Aga-Mir-305  Asu-Mir-305  Bge-Mir-305  Csc-Mir-305  Dan-Mir-305  Dlo-Mir-305  Dma-Mir-305  Dme-Mir-305  Dmo-Mir-305  Dpu-Mir-305  Dsi-Mir-305  Dya-Mir-305  Gpa-Mir-305  Hme-Mir-305  Isc-Mir-305  Tca-Mir-305  Tur-Mir-305 
Node of Origin (locus) L. polyphemus
Node of Origin (family) Cryptovermes
Genome context
(GCF_000517525.1_Limulus_polyphemus-2.1.2_genomic)		 NW_013667589.1: 122666-122725 [+] Ensembl
Clustered miRNAs
(< 50kb from Mir-305-P4)		 Mir-275-P4-v1 NW_013667589.1: 119389-119451 [+] Ensembl
Mir-275-P4-v2 NW_013667589.1: 119392-119449 [+] Ensembl
Mir-305-P4 NW_013667589.1: 122666-122725 [+] Ensembl
Seed UUGUACU
Precursor
(pre-Mir +30nt flank)		 
AAUUUGGAAAUGGCCCUUUUCCACCAGUUAUUUGUACUUCAUCAGGUGCUCUGGUGAUCUUCUAUCCAGGCAUCUUAUGCAGUGCAAUUUAUAGGUGGUCUCUCUGCAUCUAUAAGACAG
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Structure
        10        20          30        40        50          
AAUUUGGAAAUGGCCCUUUU--|    A  UAU       U   C      U    UGAUC 
                      CCACC GU   UUGUACU CAU AGGUGC CUGG     \
                      GGUGG UA   AACGUGA GUA UCUACG GACC     U
GACAGAAUAUCUACGUCUCUCU^    A  UUU       C   U      -    UAUCU 
.       110       100        90        80        70
Deep sequencing
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3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
- +
Ge Ge So So So To
Mature sequence

Lpo-Mir-305-P4_5p
mirBase accessionNone
Sequence 
0- UUUGUACUUCAUCAGGUGCUCUGG -24
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Star sequence

Lpo-Mir-305-P4_3p* (predicted)
mirBase accessionNone
Sequence 
37- AGGCAUCUUAUGCAGUGCAAUUU -60
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