MirGeneDB 3.0
MirGeneDB ID

Lpo-Mir-305-P6

Family name MIR-305 (all species)
Species Atlantic horseshoe crab (Limulus polyphemus)
MiRBase ID
Paralogues Lpo-Mir-305-P4  Lpo-Mir-305-P5  Lpo-Mir-305-P7  Lpo-Mir-305-P8 
Orthologues Aae-Mir-305  Aga-Mir-305  Asu-Mir-305  Bge-Mir-305  Csc-Mir-305  Dan-Mir-305  Dlo-Mir-305  Dma-Mir-305  Dme-Mir-305  Dmo-Mir-305  Dpu-Mir-305  Dsi-Mir-305  Dya-Mir-305  Gpa-Mir-305  Hme-Mir-305  Isc-Mir-305  Tca-Mir-305  Tur-Mir-305 
Node of Origin (locus) L. polyphemus
Node of Origin (family) Cryptovermes
Genome context
(GCF_000517525.1_Limulus_polyphemus-2.1.2_genomic)		 NW_013665698.1: 827497-827555 [+] Ensembl
Clustered miRNAs
(< 50kb from Mir-305-P6)		 Mir-275-P6 NW_013665698.1: 806533-806595 [+] Ensembl
Mir-305-P6 NW_013665698.1: 827497-827555 [+] Ensembl
Seed UUGUACU
Precursor
(pre-Mir +30nt flank)		 
AAGUUUGGUUUUCAAAGUCGCCACCAGUUGAUUGUACUUCAUCAGGUGCUCUGGUGAGGUUGUUCCAGGCAUCUUAUGGAGUGCAACUGAUAAGUGGUACUGUAACGUCCAAUGUCACU
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Structure
        10          20        30        40        50         
AAGUUUGGUUUUCAAAGUC--|    CA   GA           C      U    UGAG 
                     GCCAC  GUU  UUGUACUUCAU AGGUGC CUGG    G
                     UGGUG  UAG  AACGUGAGGUA UCUACG GACC    U
UCACUGUAACCUGCAAUGUCA^    AA   UC           U      -    UUGU 
       110       100        90        80        70         60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Ge Ge So So So To
Mature sequence

Lpo-Mir-305-P6_5p
mirBase accessionNone
Sequence 
0- AUUGUACUUCAUCAGGUGCUCUGG -24
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Star sequence

Lpo-Mir-305-P6_3p*
mirBase accessionNone
Sequence 
36- AGGCAUCUUAUGGAGUGCAACUG -59
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