MirGeneDB 3.0
MirGeneDB ID

Lpo-Iab-4-P5

Family name IAB-4 (all species)
Species Atlantic horseshoe crab (Limulus polyphemus)
MiRBase ID
Paralogues Lpo-Iab-4-P3  Lpo-Iab-4-P3-as  Lpo-Iab-4-P4  Lpo-Iab-4-P5-as 
Orthologues Aga-Iab-4  Bge-Iab-4  Dan-Iab-4  Dlo-Iab-4  Dma-Iab-4  Dme-Iab-4  Dmo-Iab-4  Dpu-Iab-4  Dsi-Iab-4  Dya-Iab-4  Gpa-Iab-4  Hme-Iab-4  Isc-Iab-4  Tca-Iab-4 
Node of Origin (locus) L. polyphemus
Node of Origin (family) Arthropoda
Genome context
(GCF_000517525.1_Limulus_polyphemus-2.1.2_genomic)		 NW_013675054.1: 13731-13788 [-] Ensembl
Clustered miRNAs
(< 50kb from Iab-4-P5)		 Iab-4-P5 NW_013675054.1: 13731-13788 [-] Ensembl
Iab-4-P5-as NW_013675054.1: 13732-13790 [+] Ensembl
Seed CGUAUAC
Precursor
(pre-Mir +30nt flank)		 
GAUGGAGAGAGGAUUGAAGAAGUCUCUAGUUCGUAUACUGAAUGUAUCCUGAGUGUAAAACUUUCCGGUACACCUUCAGUAUACGUAGCUAGCGACUUGCAUUUACGUCAGGAAGAAC
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Structure
        10         20        30         40          50        
GAUGGAGAGAGGAUUGAAG-     U      -           --|   U  U  GUGUA 
                    AAGUC CUAGUU CGUAUACUGAA  UGUA CC GA     \
                    UUCAG GAUCGA GCAUAUGACUU  ACAU GG CU     A
CAAGAAGGACUGCAUUUACG     C      U           CC^   -  C  UUCAA 
      110       100        90        80        70         60
Deep sequencing
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3' NTU Unknown
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
- +
Ge Ge So So So To
Mature sequence

Lpo-Iab-4-P5_5p
mirBase accessionNone
Sequence 
0- UCGUAUACUGAAUGUAUCCUGA -22
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Star sequence

Lpo-Iab-4-P5_3p*
mirBase accessionNone
Sequence 
36- GGUACACCUUCAGUAUACGUAG -58
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