Iab-4-P3-as

MirGeneDB ID

Lpo-Iab-4-P3-as

Family name

IAB-4 (all species)

Species

Atlantic horseshoe crab (Limulus polyphemus)

MiRBase ID

Paralogues

Lpo-Iab-4-P3 Lpo-Iab-4-P4 Lpo-Iab-4-P5 Lpo-Iab-4-P5-as

Orthologues

Aga-Iab-4 Bge-Iab-4 Dan-Iab-4 Dlo-Iab-4 Dma-Iab-4 Dme-Iab-4 Dmo-Iab-4 Dpu-Iab-4 Dsi-Iab-4 Dya-Iab-4 Gpa-Iab-4 Hme-Iab-4 Isc-Iab-4 Tca-Iab-4

Node of Origin (locus)

L. polyphemus

Node of Origin (family)

Arthropoda

Genome context
(GCF_000517525.1_Limulus_polyphemus-2.1.2_genomic)

NW_013666418.1: 83536-83596 [+] Ensembl

Clustered miRNAs
(< 50kb from Iab-4-P3-as)

Iab-4-P3 NW_013666418.1: 83535-83594 [-] Ensembl
Iab-4-P3-as NW_013666418.1: 83536-83596 [+] Ensembl

Seed

GGAUACA

Precursor
(pre-Mir +30nt flank)

GCUCUUCUGGACGAAACUAGAGUCGCCUGCUACGUAUACUGAAGGUAUACCGGAAAGUAAAUAAAACUCAGGAUACAGUCAGUAUACGAGCAGGAGUCUCUACCAUACUUCACACCGUUUC

Get precursor sequence

Structure

        10          20        30        40        50        60 
GCUCUUCUGGACGAAAC--|    UCG      A          AG    A  G  AAGUAA 
                   UAGAG   CCUGCU CGUAUACUGA  GUAU CC GA      \
                   AUCUC   GGACGA GCAUAUGACU  CAUA GG CU      A
CUUUGCCACACUUCAUACC^    UGA      -          GA    -  A  CAAAAU 
 .       110       100        90         80         70

Deep sequencing

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3' NTU

Unknown

Motifs

CNNC at 3p(+17)

Tissue expression

Ge	Ge	So	So	So	To

Star sequence

Lpo-Iab-4-P3-as_5p*

mirBase accession

None

Sequence

0- UACGUAUACUGAAGGUAUACCGGA -24

Get sequence

Mature sequence

Lpo-Iab-4-P3-as_3p

mirBase accession

None

Sequence

39- AGGAUACAGUCAGUAUACGAGC -61

Get sequence