Mir-1992

MirGeneDB ID

Gsa-Mir-1992

Family name

MIR-1992 (all species)

Species

Russian doll killer (Gyrodactylus salaris)

MiRBase ID

gsa-mir-1992

Paralogues

Orthologues

Agr-Mir-1992 Cte-Mir-1992 Dgr-Mir-1992 Eba-Mir-1992 Efe-Mir-1992-P3 Efe-Mir-1992-P4 Egr-Mir-1992 Esc-Mir-1992 Hru-Mir-1992 Lan-Mir-1992 Lgi-Mir-1992-P1 Lgi-Mir-1992-P2 Llo-Mir-1992 Mgi-Mir-1992 Mom-Mir-1992 Npo-Mir-1992 Obi-Mir-1992 Ofu-Mir-1992 Ovu-Mir-1992 Pau-Mir-1992 Pcr-Mir-1992 Pdu-Mir-1992 Pve-Mir-1992 Rph-Mir-1992 Sma-Mir-1992 Sme-Mir-1992-P5 Sme-Mir-1992-P6-v1 Snu-Mir-1992 War-Mir-1992

Node of Origin (locus)

Platytrochozoa

Node of Origin (family)

Platytrochozoa

Genome context
(gyrodactylus_salaris.PRJNA244375.WBPS19.genomic)

scf7180006949739: 1940-2002 [-] UCSC Ensembl

Seed

CAGCAGU

Precursor
(pre-Mir +30nt flank)

UUGUUAUGAAUUAACGUCCGAUCAUAUAUGUGGCUAUGUUCAAUUGCUUUGAUACCUUAAGUUGCGUUUAUCAGCAGUUGAGUCAUUGUCAUGUAAAUUUCGGAAAAUAGCGAUAUUUCAUCU

Get precursor sequence

Structure

        10           20        30         40        50        60 
UUGUUAUGAAUUAACGU---|   UCAUA        U   -          UU   ACCUUAA 
                    CCGA     UAUGUGGC AUG UUCAAUUGCU  GAU       G
                    GGCU     AUGUACUG UAC GAGUUGACGA  CUA       U
UCUACUUUAUAGCGAUAAAA^   UUAA-        U   U          --   UUUGCGU 
 120       110       100         90        80          70