MirGeneDB 3.0
MirGeneDB ID

Sme-Mir-1992-P6

Family name MIR-1992 (all species)
Species Freshwater planarian (Schmidtea mediterranea)
MiRBase ID sme-mir-2149
Paralogues Sme-Mir-1992-P5 
Orthologues Agr-Mir-1992  Cte-Mir-1992  Dgr-Mir-1992  Eba-Mir-1992  Egr-Mir-1992  Esc-Mir-1992  Gsa-Mir-1992  Hru-Mir-1992  Lan-Mir-1992  Llo-Mir-1992  Mgi-Mir-1992  Mom-Mir-1992  Npo-Mir-1992  Obi-Mir-1992  Ofu-Mir-1992  Ovu-Mir-1992  Pau-Mir-1992  Pcr-Mir-1992  Pdu-Mir-1992  Pve-Mir-1992  Rph-Mir-1992  Sma-Mir-1992  Snu-Mir-1992  War-Mir-1992 
Node of Origin (locus) S. mediterranea
Node of Origin (family) Platytrochozoa
Genome context
(Sme_GCA_002600895.1_ASM260089v1_alt)		 NNSW01000053_dd_Smes_g4_53: 1164867-1164928 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-1992-P6-v1)		 Mir-1992-P6-v2 NNSW01000053_dd_Smes_g4_53: 1164866-1164929 [-] UCSC Ensembl
Mir-1992-P6-v1 NNSW01000053_dd_Smes_g4_53: 1164867-1164928 [-] UCSC Ensembl
Variant

Sme-Mir-1992-P6-v1
Seed GCCAAUG
Precursor
(pre-Mir +30nt flank)		 
GUAUAUAUUUGCAGAAGAUCAAAUGAGUACCGCCAAUGACAAACUGUUGAUGAAGACUUUGUCACAAUUAUCAGCAGUUGUCCAUUGACGUUAUUUACCUUCGUUUUCAUCGAACUAUUUUU
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Structure
        10        20          30         40        50        60
GUAUAUAUUUGCAGAAGAUCAAA--      C  C    -|    A        GAAGACUU 
                         UGAGUA CG CAAU GACAA CUGUUGAU        U
                         AUUUAU GC GUUA CUGUU GACGACUA        G
UUUUUAUCAAGCUACUUUUGCUUCC      U  A    C^    -        UUAACACU 
120       110       100        90        80         70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Ag Ag Di Gf Ne Ph Se Se Se Se Se Se Se Se Se Se Se Wh Wh Wh
Mature sequence

Sme-Mir-1992-P6-v1_5p
mirBase accessionMIMAT0011229
Sequence 
0- CGCCAAUGACAAACUGUUGAU -21
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Star sequence

Sme-Mir-1992-P6-v1_3p*
mirBase accessionMIMAT0012134
Sequence 
40- UCAGCAGUUGUCCAUUGACGUU -62
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Variant

Sme-Mir-1992-P6-v2
Seed CGCCAAU
Precursor
(pre-Mir +30nt flank)		 
UGUAUAUAUUUGCAGAAGAUCAAAUGAGUACCGCCAAUGACAAACUGUUGAUGAAGACUUUGUCACAAUUAUCAGCAGUUGUCCAUUGACGUUAUUUACCUUCGUUUUCAUCGAACUAUUUUUU
Get precursor sequence
Structure
        10            20        30         40        50        60 
UGUAUAUAUUUGCAGAA----| UCAAA      C  C     -    A        GAAGACUU 
                     GA     UGAGUA CG CAAUG ACAA CUGUUGAU        U
                     CU     AUUUAU GC GUUAC UGUU GACGACUA        G
UUUUUUAUCAAGCUACUUUUG^ UCC--      U  A     C    -        UUAACACU 
  120       110       100          90        80         70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
- +
Ag Ag Di Gf Ne Ph Se Se Se Se Se Se Se Se Se Se Se Wh Wh Wh
Mature sequence

Sme-Mir-1992-P6-v2_5p
mirBase accessionMIMAT0011229
Sequence 
0- CCGCCAAUGACAAACUGUUGAU -22
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Star sequence

Sme-Mir-1992-P6-v2_3p*
mirBase accessionMIMAT0012134
Sequence 
41- UCAGCAGUUGUCCAUUGACGUUA -64
Get sequence