MirGeneDB 3.0
MirGeneDB ID

Eca-Mir-146-P4

Family name MIR-146 (all species)
Species Horse (Equus caballus)
MiRBase ID eca-mir-146a
Paralogues Eca-Mir-146-P1  Eca-Mir-146-P4-v1 
Orthologues Ami-Mir-146-P4  Bta-Mir-146-P4-v1  Cfa-Mir-146-P4  Cja-Mir-146-P4  Cli-Mir-146-P4  Cmi-Mir-146-P4  Cpi-Mir-146-P4  Cpo-Mir-146-P4  Dno-Mir-146-P4  Dre-Mir-146-P4-v1  Ebu-Mir-146  Gga-Mir-146-P4  Hsa-Mir-146-P4  Laf-Mir-146-P4  Lch-Mir-146-P4  Loc-Mir-146-P4  Mdo-Mir-146-P4  Mml-Mir-146-P4  Mmr-Mir-146-P4  Mmu-Mir-146-P4  Mun-Mir-146-P4  Neu-Mir-146-P4  Oan-Mir-146-P4  Ocu-Mir-146-P4  Pab-Mir-146-P4  Pma-Mir-146  Rno-Mir-146-P4  Sha-Mir-146-P4  Spt-Mir-146-P4  Sto-Mir-146-P4  Tgu-Mir-146-P4  Xla-Mir-146-P4  Xtr-Mir-146-P4 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCA_002863925.1_EquCab3.0)		 CM009161.1: 18375050-18375108 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-146-P4-v2)		 Mir-146-P4-v1 CM009161.1: 18375050-18375107 [-] UCSC Ensembl
Mir-146-P4-v2 CM009161.1: 18375050-18375108 [-] UCSC Ensembl
Variant

Eca-Mir-146-P4-v2
Seed UGAGAAC
Precursor
(pre-Mir +30nt flank)		 
GCGCUGGAAAGCCUGUGUGUAUCCUCAGCUUUGAGAACUGAAUUCCAUGGGUUGUGUCAGCGUCAGACCUGUGAAGUUCAGUUCUUCAGCUGGGAUAUCUCUGUCAUCGUGGACUCAGG
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Structure
        10           20        30        40        50         
GCGCUGGAAAGCCUGUGU---|     U     UU            C        GUGUC 
                     GUAUCC CAGCU  GAGAACUGAAUU CAUGGGUU     A
                     UAUAGG GUCGA  UUCUUGACUUGA GUGUCCAG     G
GGACUCAGGUGCUACUGUCUC^     -     C-            A        ACUGC 
       110       100         90         80        70        60
Deep sequencing
Go to detailed chart
3' NTU Unknown
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
- +
Ps Bo Ca Em En En En En En En En Gl He He Ho Im Ki Li Lo Lu Ma Ma Mi Pl Sp Te Tr Ut Ut Yo
Mature sequence

Eca-Mir-146-P4-v2_5p
mirBase accessionMIMAT0013065
Sequence 
0- UUGAGAACUGAAUUCCAUGGGUU -23
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Star sequence

Eca-Mir-146-P4-v2_3p* (predicted)
mirBase accessionNone
Sequence 
37- CCUGUGAAGUUCAGUUCUUCAG -59
Get sequence
Variant

Eca-Mir-146-P4-v1
Seed GAGAACU
Precursor
(pre-Mir +30nt flank)		 
CGCUGGAAAGCCUGUGUGUAUCCUCAGCUUUGAGAACUGAAUUCCAUGGGUUGUGUCAGCGUCAGACCUGUGAAGUUCAGUUCUUCAGCUGGGAUAUCUCUGUCAUCGUGGACUCAGG
Get precursor sequence
Structure
        10            20        30        40        50        
CGCUGGAAAGCCUGUGU----|     U     UU            C        GUGUC 
                     GUAUCC CAGCU  GAGAACUGAAUU CAUGGGUU     A
                     UAUAGG GUCGA  UUCUUGACUUGA GUGUCCAG     G
GGACUCAGGUGCUACUGUCUC^     -     C-            A        ACUGC 
      110       100         90         80        70        60
Deep sequencing
Go to detailed chart
3' NTU Unknown
MotifsUG at 5p(-14), CNNC at 3p(+17), UGUG in loop
Tissue expression
- +
Ps Bo Ca Em En En En En En En En Gl He He Ho Im Ki Li Lo Lu Ma Ma Mi Pl Sp Te Tr Ut Ut Yo
Mature sequence

Eca-Mir-146-P4-v1_5p
mirBase accessionMIMAT0013065
Sequence 
0- UGAGAACUGAAUUCCAUGGGUU -22
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Star sequence

Eca-Mir-146-P4-v1_3p* (predicted)
mirBase accessionNone
Sequence 
36- CCUGUGAAGUUCAGUUCUUCAG -58
Get sequence