MirGeneDB 3.0
MirGeneDB ID

Ebu-Mir-124-P5

Family name MIR-124 (all species)
Species Inshore hagfish (Eptatretus burgeri)
MiRBase ID
Paralogues Ebu-Mir-124-P5-v1  Ebu-Mir-124-P6-v1 
Orthologues Aae-Mir-124  Aga-Mir-124  Agr-Mir-124  Asu-Mir-124  Bfl-Mir-124  Bge-Mir-124  Bko-Mir-124  Bla-Mir-124  Bpl-Mir-124  Cel-Mir-124  Cte-Mir-124  Dan-Mir-124  Dlo-Mir-124  Dma-Mir-124  Dme-Mir-124  Dmo-Mir-124  Dpu-Mir-124  Dsi-Mir-124  Dya-Mir-124  Eba-Mir-124  Esc-Mir-124  Gpa-Mir-124  Gsp-Mir-124  Hme-Mir-124  Hru-Mir-124  Isc-Mir-124  Lan-Mir-124  Lhy-Mir-124  Llo-Mir-124  Mgi-Mir-124  Mom-Mir-124  Npo-Mir-124  Obi-Mir-124  Ofu-Mir-124  Ovu-Mir-124  Pau-Mir-124  Pcr-Mir-124-o5  Pdu-Mir-124  Pfl-Mir-124  Pmi-Mir-124  Pve-Mir-124  Sko-Mir-124  Sma-Mir-124  Sne-Mir-124  Snu-Mir-124  Spu-Mir-124  Sro-Mir-124  Tca-Mir-124  War-Mir-124  Xbo-Mir-124 
Node of Origin (locus) E. burgeri
Node of Origin (family) Bilateria
Genome context
(Eburgeri_3)		 FYBX02000126.1: 461510-461567 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-124-P5-v2)		 Mir-124-P5-v1 FYBX02000126.1: 461509-461567 [-] UCSC Ensembl
Mir-124-P5-v2 FYBX02000126.1: 461510-461567 [-] UCSC Ensembl
Variant

Ebu-Mir-124-P5-v2
Seed UAAGGCA
Precursor
(pre-Mir +30nt flank)		 
UGCGUCCGUCCAUCCACGGCCACCAUUCUGCGUGUUCACAGCGGACCUUGAUUUAAUGUCAUACAAUUAAGGCACGCGGUGAAUGCCAAGAACGGGGUCGACGAAUCAUCCACUGAGG
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Structure
        10          20         30        40        50         
UGCGUCCGUCCAUCCAC--|   A  A    - C        A   GA        UAAUG 
                   GGCC CC UUCU G GUGUUCAC GCG  CCUUGAUU     \
                   CUGG GG AAGA C CGUAAGUG CGC  GGAAUUAA     U
GGAGUCACCUACUAAGCAG^   -  C    A -        G   AC        CAUAC 
      110       100         90         80        70        60
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
- +
To
Star sequence

Ebu-Mir-124-P5-v2_5p* (predicted)
mirBase accessionNone
Sequence 
0- CGUGUUCACAGCGGACCUUGAUU -23
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Mature sequence

Ebu-Mir-124-P5-v2_3p
mirBase accessionNone
Sequence 
36- UUAAGGCACGCGGUGAAUGCCA -58
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Variant

Ebu-Mir-124-P5-v1
Seed AAGGCAC
Precursor
(pre-Mir +30nt flank)		 
UGCGUCCGUCCAUCCACGGCCACCAUUCUGCGUGUUCACAGCGGACCUUGAUUUAAUGUCAUACAAUUAAGGCACGCGGUGAAUGCCAAGAACGGGGUCGACGAAUCAUCCACUGAGGC
Get precursor sequence
Structure
        10           20         30        40        50         
UGCGUCCGUCCAUCCAC---|   A  A    - C        A   GA       UUAAUG 
                    GGCC CC UUCU G GUGUUCAC GCG  CCUUGAU      \
                    CUGG GG AAGA C CGUAAGUG CGC  GGAAUUA      U
CGGAGUCACCUACUAAGCAG^   -  C    A -        G   AC       ACAUAC 
       110       100         90         80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
To
Star sequence

Ebu-Mir-124-P5-v1_5p* (predicted)
mirBase accessionNone
Sequence 
0- CGUGUUCACAGCGGACCUUGAU -22
Get sequence
Mature sequence

Ebu-Mir-124-P5-v1_3p
mirBase accessionNone
Sequence 
37- UAAGGCACGCGGUGAAUGCCAA -59
Get sequence