MirGeneDB 3.0
MirGeneDB ID

Bta-Mir-146-P4

Family name MIR-146 (all species)
Species Cow (Bos taurus)
MiRBase ID bta-mir-146a
Paralogues Bta-Mir-146-P1  Bta-Mir-146-P4-v1 
Orthologues Ami-Mir-146-P4  Cfa-Mir-146-P4  Cja-Mir-146-P4  Cli-Mir-146-P4  Cmi-Mir-146-P4  Cpi-Mir-146-P4  Cpo-Mir-146-P4  Dno-Mir-146-P4  Dre-Mir-146-P4-v1  Ebu-Mir-146  Eca-Mir-146-P4-v1  Gga-Mir-146-P4  Hsa-Mir-146-P4  Laf-Mir-146-P4  Lch-Mir-146-P4  Loc-Mir-146-P4  Mdo-Mir-146-P4  Mml-Mir-146-P4  Mmr-Mir-146-P4  Mmu-Mir-146-P4  Mun-Mir-146-P4  Neu-Mir-146-P4  Oan-Mir-146-P4  Ocu-Mir-146-P4  Pab-Mir-146-P4  Pma-Mir-146  Rno-Mir-146-P4  Sha-Mir-146-P4  Spt-Mir-146-P4  Sto-Mir-146-P4  Tgu-Mir-146-P4  Xla-Mir-146-P4  Xtr-Mir-146-P4 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCF_002263795.1_ARS-UCD1.2_BTA)		 NC_037334.1: 72071567-72071625 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-146-P4-v2)		 Mir-146-P4-v2 NC_037334.1: 72071567-72071625 [+] UCSC Ensembl
Mir-146-P4-v1 NC_037334.1: 72071568-72071625 [+] UCSC Ensembl
Variant

Bta-Mir-146-P4-v2
Seed UGAGAAC
Precursor
(pre-Mir +30nt flank)		 
ACUCUGGAAAGCCCAUGUGUAUCCUCAGCUUUGAGAACUGAAUUCCAUAGGUUGUGUCAGUGUCAGACCUGUGAAGUUUAGUUCUUUAGCUGGGAUAUCUCUAUCAUCCUAGAUUCGAG
Get precursor sequence
Structure
        10           20        30        40        50         
ACUCUGGAAAGCCCAUGU---|     U     UU            C        GUGUC 
                     GUAUCC CAGCU  GAGAACUGAAUU CAUAGGUU     A
                     UAUAGG GUCGA  UUCUUGAUUUGA GUGUCCAG     G
GAGCUUAGAUCCUACUAUCUC^     -     U-            A        ACUGU 
       110       100         90         80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
- +
Ad Bo Br Ce Co Co De Fe He Hy Ir Ki La Lo Mi No Op Or Pe Re Su Te
Mature sequence

Bta-Mir-146-P4-v2_5p
mirBase accessionMIMAT0009236
Sequence 
0- UUGAGAACUGAAUUCCAUAGGUU -23
Get sequence
Proposed targets TargetScanVert: bta-miR-146a
Star sequence

Bta-Mir-146-P4-v2_3p*
mirBase accessionNone
Sequence 
37- CCUGUGAAGUUUAGUUCUUUAG -59
Get sequence
Variant

Bta-Mir-146-P4-v1
Seed GAGAACU
Precursor
(pre-Mir +30nt flank)		 
CUCUGGAAAGCCCAUGUGUAUCCUCAGCUUUGAGAACUGAAUUCCAUAGGUUGUGUCAGUGUCAGACCUGUGAAGUUUAGUUCUUUAGCUGGGAUAUCUCUAUCAUCCUAGAUUCGAG
Get precursor sequence
Structure
        10            20        30        40        50        
CUCUGGAAAGCCCAUGU----|     U     UU            C        GUGUC 
                     GUAUCC CAGCU  GAGAACUGAAUU CAUAGGUU     A
                     UAUAGG GUCGA  UUCUUGAUUUGA GUGUCCAG     G
GAGCUUAGAUCCUACUAUCUC^     -     U-            A        ACUGU 
      110       100         90         80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17), UGUG in loop
Tissue expression
- +
Ad Bo Br Ce Co Co De Fe He Hy Ir Ki La Lo Mi No Op Or Pe Re Su Te
Mature sequence

Bta-Mir-146-P4-v1_5p
mirBase accessionMIMAT0009236
Sequence 
0- UGAGAACUGAAUUCCAUAGGUU -22
Get sequence
Proposed targets TargetScanVert: bta-miR-146a
Star sequence

Bta-Mir-146-P4-v1_3p*
mirBase accessionNone
Sequence 
36- CCUGUGAAGUUUAGUUCUUUAG -58
Get sequence