MirGeneDB 3.0

29 microRNA genes with seed CAGCAGU
Sort by genome coordinates Motifs
MirGeneDB ID MiRBase ID Family Seed 5p accession 3p accession Chromosome Start End Strand Node of origin (locus) Node of origin (family) Iso­miR 3' NTU  UG  UGUG CNNC
Sme-Mir-1992-P5 sme-mir-1992 MIR-1992 CAGCAGU MIMAT0012142 MIMAT0011243 NNSW01000030_dd_Smes_g4_30 1784506 1784563 + S. mediterranea Platytrochozoa No 1
Efe-Mir-1992-P4 None MIR-1992 CAGCAGU None None Efe-Mir-1992-P4_manual_assembly 60 121 + E. fetida Platytrochozoa Yes 1
Efe-Mir-1992-P3 None MIR-1992 CAGCAGU None None Efet.01.192781 1365 1426 - E. fetida Platytrochozoa No 1
Lgi-Mir-1992-P2 lgi-mir-1992 MIR-1992 CAGCAGU None MIMAT0009722 LOTGIsca_253 35945 36002 - L. gigantea Platytrochozoa No 1
Lgi-Mir-1992-P1 None MIR-1992 CAGCAGU None None LOTGIsca_253 36542 36604 - L. gigantea Platytrochozoa No 1
War-Mir-1992 None MIR-1992 CAGCAGU None None WNLI01150749.1 2727 2787 + Platytrochozoa Platytrochozoa No 1 1 1
Snu-Mir-1992 None MIR-1992 CAGCAGU None None CM049321.1 9019061 9019120 - Platytrochozoa Platytrochozoa Yes 1 1
Sma-Mir-1992 None MIR-1992 CAGCAGU None None HE601630.3 11729903 11730000 - Platytrochozoa Platytrochozoa Yes 1
Rph-Mir-1992 None MIR-1992 CAGCAGU None None CM018537.1 21686874 21686934 + Platytrochozoa Platytrochozoa No 1
Pve-Mir-1992 None MIR-1992 CAGCAGU None None Pve_Chr7 307636520 307636581 - Platytrochozoa Platytrochozoa No 1
Pdu-Mir-1992 None MIR-1992 AUUAGUG None None JAPTHN010000012.1 23661449 23661512 - Platytrochozoa Platytrochozoa No 1 1
Pcr-Mir-1992 None MIR-1992 CAGCAGU None None CAJQUW010011562.1 46557 46616 - Platytrochozoa Platytrochozoa No 1 1
Pau-Mir-1992 None MIR-1992 CAGCAGU None None NMRA01000176.1 600304 600363 - Platytrochozoa Platytrochozoa No 1 1
Ovu-Mir-1992 None MIR-1992 CAGCAGU None None RXHP01067614.1 139572 139636 - Platytrochozoa Platytrochozoa No 1 1
Ofu-Mir-1992 None MIR-1992 CAGCAGU None None CAIIXF020000007.1 19293990 19294047 - Platytrochozoa Platytrochozoa No 1
Obi-Mir-1992 None MIR-1992 CAGCAGU None None KQ417055 214659 214723 - Platytrochozoa Platytrochozoa No 1 1
Npo-Mir-1992 None MIR-1992 CAGCAGU None None JACATO010001876.1 280757 280818 - Platytrochozoa Platytrochozoa Unknown 1
Mom-Mir-1992 None MIR-1992 CAGCAGU None None JARFOD010069075.1 4156 4218 - Platytrochozoa Platytrochozoa No 1
Mgi-Mir-1992 None MIR-1992 CAGCAGU None None scaffold43940 216503 216560 - Platytrochozoa Platytrochozoa No
Llo-Mir-1992 None MIR-1992 CAGCAGU None None OU343006.1 11524061 11524119 - Platytrochozoa Platytrochozoa No 1
Lan-Mir-1992 None MIR-1992 CAGCAGU None None LFEI01000407 220692 220752 + Platytrochozoa Platytrochozoa No 1
Hru-Mir-1992 None MIR-1992 CAGCAGU None None JALGQA010000004.1 53166576 53166639 + Platytrochozoa Platytrochozoa No 1
Gsa-Mir-1992 gsa-mir-1992 MIR-1992 CAGCAGU MIMAT0035312 MIMAT0035313 scf7180006949739 1940 2002 - Platytrochozoa Platytrochozoa No
Esc-Mir-1992 None MIR-1992 CAGCAGU None None CM044512.1 55046642 55046704 + Platytrochozoa Platytrochozoa No 1
Egr-Mir-1992 egr-mir-1992 MIR-1992 CAGCAGU MIMAT0041197 MIMAT0041198 APAU02000092.1 131564 131631 + Platytrochozoa Platytrochozoa No 1 1
Eba-Mir-1992 None MIR-1992 CAGCAGU None None WURV02157674.1 2512 2572 + Platytrochozoa Platytrochozoa No 1 1
Dgr-Mir-1992 None MIR-1992 CAGCAGU None None CAJFCJ010000020.1 618774 618835 - Platytrochozoa Platytrochozoa Unknown 1
Cte-Mir-1992 cte-mir-1992 MIR-1992 CAGCAGU None MIMAT0009700 CAPTEscaffold_189 201929 201990 + Platytrochozoa Platytrochozoa Yes 1 1
Agr-Mir-1992 None MIR-1992 CAGCAGU None None JABBOT010000016.1 10375477 10375539 - Platytrochozoa Platytrochozoa No 1 1

(red - mature/co-mature, blue - star)

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