MirGeneDB 3.0
MirGeneDB ID

Xla-Mir-142-P2b1

Family name MIR-142 (all species)
Species African clawed frog (Xenopus laevis)
MiRBase ID xla-mir-142
Paralogues Xla-Mir-142-P2a1-v1  Xla-Mir-142-P2a2-v1  Xla-Mir-142-P2b1-v1  Xla-Mir-142-P2b2-v1 
Orthologues Ami-Mir-142-P2-v1  Bta-Mir-142-P2-v1  Cfa-Mir-142-P2-v1  Cja-Mir-142-P2-v1  Cli-Mir-142-P2-v1  Cmi-Mir-142-P2-v1  Cpi-Mir-142-P2-v1  Cpo-Mir-142-P2-v1  Dno-Mir-142-P2-v1  Dre-Mir-142-P2-v1  Eca-Mir-142-P2-v1  Ete-Mir-142-P2-v1  Gga-Mir-142-P2-v1  Gmo-Mir-142-P2-v1  Hsa-Mir-142-P2-v1  Lch-Mir-142-P2  Loc-Mir-142-P2-v1  Mal-Mir-142-P2-v1  Mdo-Mir-142-P2-v1  Mml-Mir-142-P2-v1  Mmr-Mir-142-P2-v1  Mmu-Mir-142-P2-v1  Neu-Mir-142-P2-v1  Oan-Mir-142-P2-v1  Ocu-Mir-142-P2-v1  Pab-Mir-142-P2-v1  Rno-Mir-142-P2-v1  Sha-Mir-142-P2-v1  Spt-Mir-142-P2  Sto-Mir-142-P2-v1  Tgu-Mir-142-P2-v1  Tni-Mir-142-P2-v1  Xtr-Mir-142-P2b-v1 
Node of Origin (locus) X. laevis
Node of Origin (family) Vertebrata
Genome context
(GCF_001663975.1_XLA_v2)		 NC_030727.1: 31425406-31425465 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-142-P2b1-v3)		 Mir-142-P2a2-v4 NC_030727.1: 31425404-31425467 [+] UCSC Ensembl
Mir-142-P2b1-v4 NC_030727.1: 31425404-31425467 [+] UCSC Ensembl
Mir-142-P2b1-v1 NC_030727.1: 31425406-31425465 [+] UCSC Ensembl
Mir-142-P2b1-v2 NC_030727.1: 31425406-31425465 [+] UCSC Ensembl
Mir-142-P2b1-v3 NC_030727.1: 31425406-31425465 [+] UCSC Ensembl
Mir-142-P2b2-v4 NC_030727.1: 31426967-31427030 [+] UCSC Ensembl
Mir-142-P2b2-v1 NC_030727.1: 31426969-31427028 [+] UCSC Ensembl
Mir-142-P2b2-v2 NC_030727.1: 31426969-31427028 [+] UCSC Ensembl
Mir-142-P2b2-v3 NC_030727.1: 31426969-31427028 [+] UCSC Ensembl
Variant

Xla-Mir-142-P2b1-v3
Seed GUAGUGU
Precursor
(pre-Mir +30nt flank)		 
GAGAAAACCUGGACAUGCAGUGCAGCCACCCAUAAAGUAGAAAGCACUACUAGACAGGACUGAACGCUGUAGUGUUUCCUACUUUAUGGAUGAGUGUACUGGACGCUACGAGACCUCACA
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Structure
        10          20        30        40        50         
GAGAAAACCUGGACAUG--|      GC  C           A         UAGACAGG 
                   CAGUGCA  CA CCAUAAAGUAG AAGCACUAC        A
                   GUCAUGU  GU GGUAUUUCAUC UUUGUGAUG        C
ACACUCCAGAGCAUCGCAG^      GA  A           C         UCGCAAGU 
.       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Em
Star sequence

Xla-Mir-142-P2b1-v3_5p*
mirBase accessionMIMAT0011139
Sequence 
0- CAUAAAGUAGAAAGCACUACUAG -23
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Mature sequence

Xla-Mir-142-P2b1-v3_3p
mirBase accessionNone
Sequence 
37- UGUAGUGUUUCCUACUUUAUGGA -60
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Variant

Xla-Mir-142-P2b1-v1
Seed AUAAAGU
Precursor
(pre-Mir +30nt flank)		 
GAGAAAACCUGGACAUGCAGUGCAGCCACCCAUAAAGUAGAAAGCACUACUAGACAGGACUGAACGCUGUAGUGUUUCCUACUUUAUGGAUGAGUGUACUGGACGCUACGAGACCUCACA
Get precursor sequence
Structure
        10          20        30        40        50         
GAGAAAACCUGGACAUG--|      GC  C           A         UAGACAGG 
                   CAGUGCA  CA CCAUAAAGUAG AAGCACUAC        A
                   GUCAUGU  GU GGUAUUUCAUC UUUGUGAUG        C
ACACUCCAGAGCAUCGCAG^      GA  A           C         UCGCAAGU 
.       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Em
Mature sequence

Xla-Mir-142-P2b1-v1_5p
mirBase accessionMIMAT0011139
Sequence 
0- CAUAAAGUAGAAAGCACUACU -21
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Star sequence

Xla-Mir-142-P2b1-v1_3p*
mirBase accessionNone
Sequence 
39- UAGUGUUUCCUACUUUAUGGA -60
Get sequence
Variant

Xla-Mir-142-P2b1-v2
Seed UAGUGUU
Precursor
(pre-Mir +30nt flank)		 
GAGAAAACCUGGACAUGCAGUGCAGCCACCCAUAAAGUAGAAAGCACUACUAGACAGGACUGAACGCUGUAGUGUUUCCUACUUUAUGGAUGAGUGUACUGGACGCUACGAGACCUCACA
Get precursor sequence
Structure
        10          20        30        40        50         
GAGAAAACCUGGACAUG--|      GC  C           A         UAGACAGG 
                   CAGUGCA  CA CCAUAAAGUAG AAGCACUAC        A
                   GUCAUGU  GU GGUAUUUCAUC UUUGUGAUG        C
ACACUCCAGAGCAUCGCAG^      GA  A           C         UCGCAAGU 
.       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Em
Star sequence

Xla-Mir-142-P2b1-v2_5p*
mirBase accessionMIMAT0011139
Sequence 
0- CAUAAAGUAGAAAGCACUACUA -22
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Mature sequence

Xla-Mir-142-P2b1-v2_3p
mirBase accessionNone
Sequence 
38- GUAGUGUUUCCUACUUUAUGGA -60
Get sequence
Variant

Xla-Mir-142-P2b1-v4
Seed CCAUAAA
Precursor
(pre-Mir +30nt flank)		 
UGGAGAAAACCUGGACAUGCAGUGCAGCCACCCAUAAAGUAGAAAGCACUACUAGACAGGACUGAACGCUGUAGUGUUUCCUACUUUAUGGAUGAGUGUACUGGACGCUACGAGACCUCACAGA
Get precursor sequence
Structure
        10          20        30        40        50        60 
UGGAGAAAACCUGGACAUG--|      GC  C           A         UAGACAGG 
                     CAGUGCA  CA CCAUAAAGUAG AAGCACUAC        A
                     GUCAUGU  GU GGUAUUUCAUC UUUGUGAUG        C
AGACACUCCAGAGCAUCGCAG^      GA  A           C         UCGCAAGU 
  120       110       100        90        80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsNo
Tissue expression
- +
Em
Mature sequence

Xla-Mir-142-P2b1-v4_5p
mirBase accessionMIMAT0011139
Sequence 
0- CCCAUAAAGUAGAAAGCACUAC -22
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Star sequence

Xla-Mir-142-P2b1-v4_3p*
mirBase accessionNone
Sequence 
42- AGUGUUUCCUACUUUAUGGAUG -64
Get sequence