Mir-455-P1

MirGeneDB ID

Tni-Mir-455-P1

Family name

MIR-455 (all species)

Seed

AUGUGCC

Species

Pufferfish (Tetraodon nigroviridis)

MiRBase ID

tni-mir-455

Paralogues

Tni-Mir-455-P2

Orthologues

Aca-Mir-455 Ami-Mir-455 Bta-Mir-455 Cfa-Mir-455 Cli-Mir-455 Cmi-Mir-455 Cpi-Mir-455 Cpo-Mir-455 Dno-Mir-455 Dre-Mir-455-P1 Ete-Mir-455 Gga-Mir-455 Gja-Mir-455 Gmo-Mir-455-P1 Hsa-Mir-455 Lch-Mir-455 Loc-Mir-455 Mal-Mir-455-P1 Mdo-Mir-455 Mml-Mir-455 Mmu-Mir-455 Mun-Mir-455 Oan-Mir-455 Ocu-Mir-455 Pbv-Mir-455 Pma-Mir-455 Rno-Mir-455 Sha-Mir-455 Spt-Mir-455 Sto-Mir-455 Tgu-Mir-455 Xtr-Mir-455

Node of Origin (locus)

Clupeocephala

Node of Origin (family)

Vertebrata

Genome context
(Tetraodon_nigroviridis.TETRAODON8.dna.toplevel)

12: 4822221-4822279 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UGAGAUCGUCAGAGAUCCCUGAUGUGAGGGUAUGUGCCCUUGGACUACAUCGUGGAAGCCAGCACCAUGCAGUCCAUGGGCAUAUACACUUUCCUCAAGGCAUGUUUCUUCAGCUCUGC

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Structure

        10          20             30        40        50        
UGAGAUCGUCAGAGAUC--   GAUG     -----|         U      A   C UGGAA 
                   CCU    UGAGG     GUAUGUGCCC UGGACU CAU G     G
                   GGA    ACUCC     CAUAUACGGG ACCUGA GUA C     C
CGUCUCGACUUCUUUGUAC   ----     UUUCA^         U      C   C ACGAC 
       110       100            90        80        70        60

Deep sequencing

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Comment

There are mutliple Dicer cuts on the 3p arm.

3' NTU

Motifs

Tissue expression

Sp	Sp	Sp	To

Mature sequence

Tni-Mir-455-P1_5p

mirBase accession

MIMAT0003029

Sequence

0- UAUGUGCCCUUGGACUACAUCG -22

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Star sequence

Tni-Mir-455-P1_3p*

mirBase accession

None

Sequence

36- AUGCAGUCCAUGGGCAUAUACAC -59

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