MirGeneDB 2.1

MirGeneDB ID

Rno-Mir-455

Family name MIR-455 (all species)
Seed AUGUGCC
Species Norway rat (Rattus norvegicus)
MiRBase ID rno-mir-455
Paralogues
Orthologues Aca-Mir-455  Ami-Mir-455  Bta-Mir-455  Cfa-Mir-455  Cli-Mir-455  Cmi-Mir-455  Cpi-Mir-455  Cpo-Mir-455  Dno-Mir-455  Dre-Mir-455-P1  Dre-Mir-455-P2  Ebu-Mir-455-v1  Ebu-Mir-455-v2  Ete-Mir-455  Gga-Mir-455  Gja-Mir-455  Gmo-Mir-455-P1  Gmo-Mir-455-P2  Hsa-Mir-455  Lch-Mir-455  Loc-Mir-455  Mal-Mir-455-P1  Mal-Mir-455-P2  Mdo-Mir-455  Mml-Mir-455  Mmu-Mir-455  Mun-Mir-455  Oan-Mir-455  Ocu-Mir-455  Pbv-Mir-455  Pma-Mir-455  Sha-Mir-455  Spt-Mir-455  Sto-Mir-455  Tgu-Mir-455  Tni-Mir-455-P1  Tni-Mir-455-P2  Xla-Mir-455-P3  Xla-Mir-455-P4  Xtr-Mir-455 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(rn6)
chr5: 79097218-79097274 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UGUCCUGUGCUGCCCUCCCUGGUGUGAGCGUAUGUGCCUUUGGACUACAUCGUGGACGCAGCACCAUGCAGUCCACGGGCAUAUACACUUGCCUCAAGGUCUAUGUCAUCGAGGACC
Get precursor sequence
Structure
        10          20        30        40        50        
UGUCCUGUGCUGCCCUC-  -|  U UG  C          U      A   C UGGAC 
                  CC UGG G  AG GUAUGUGCCU UGGACU CAU G     \
                  GG ACU C  UC CAUAUACGGG ACCUGA GUA C     G
CCAGGAGCUACUGUAUCU  A^  C GU  A          C      C   C ACGAC 
     110       100        90        80        70        60
Deep sequencing
Go to detailed chart
CommentThere are mutliple Dicer cuts on the 3p arm.
3' NTU No
MotifsNo
Tissue expression
 +
Ad Ad Br Br Br Ce Ce Ce Ce Co Co Co Co Dr Dr Du Du Du Du He He Hi Hi Il Il Je Je Ki Ki Ki Ki Li Li Li Li Me Me Mu Mu Mu Mu Mu Mu Mu Mu Ov Pa Pa St St St Te Ut Wh Br Fa He Ki La Li Li Lu Mu Pa Sk Sm Sp St Te Th
Mature sequence

Rno-Mir-455_5p

mirBase accessionMIMAT0005316
Sequence
0- UAUGUGCCUUUGGACUACAUCG -22
Get sequence
Proposed targets microrna.org: MIMAT0005316
TargetScanVert: rno-miR-455-5p
miRDB: MIMAT0005316
Star sequence

Rno-Mir-455_3p*

mirBase accessionMIMAT0017308
Sequence
35- AUGCAGUCCACGGGCAUAUACA -57
Get sequence
Proposed targets TargetScanVert: rno-miR-455-3p
miRDB: MIMAT0017308